CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY49861

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57870.1	CDY49861	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020407.1-P	Field mustard	plastid	99.87	99.87
CDY02774	Canola	plastid	97.01	96.76
AT5G57870.1	Thale cress	plastid	87.92	86.79
GSMUA_Achr4P06000_001	Banana	cytosol	3.77	70.73
VIT_11s0037g00490.t01	Wine grape	plastid	64.81	62.85
CDY69274	Canola	cytosol, mitochondrion	26.62	62.69
Solyc07g005810.2.1	Tomato	plastid	62.73	62.48
PGSC0003DMT400029102	Potato	cytosol, plastid	62.21	61.41
KRH55033	Soybean	endoplasmic reticulum	61.3	60.9
KRH63081	Soybean	endoplasmic reticulum	60.91	60.59
Solyc12g009960.1.1	Tomato	nucleus	60.78	60.54
CDY28203	Canola	cytosol	40.13	60.47
PGSC0003DMT400020464	Potato	cytosol	60.65	60.41
KRH72326	Soybean	endoplasmic reticulum	61.3	60.2
CDY39236	Canola	cytosol	57.53	59.95
KRH03030	Soybean	endoplasmic reticulum	61.3	59.82
CDY28211	Canola	mitochondrion	36.36	59.32
CDX72262	Canola	cytosol	57.14	58.98
CDX68687	Canola	plastid	57.01	58.69
GSMUA_Achr9P22750_001	Banana	plastid	54.42	56.32
GSMUA_Achr4P05990_001	Banana	cytosol	10.52	55.1
Zm00001d003147_P001	Maize	plastid	56.1	54.96
EES12452	Sorghum	cytosol	56.36	54.87
Zm00001d025777_P007	Maize	plastid	55.58	54.52
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.95	54.02
Os02t0611500-01	Rice	cytosol	54.29	53.59
HORVU2Hr1G086240.1	Barley	cytosol	52.21	53.39
TraesCS2B01G373600.1	Wheat	cytosol	54.29	52.98
GSMUA_AchrUn_...	Banana	cytosol	51.17	52.81
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	54.03	52.79
TraesCS2A01G354900.1	Wheat	cytosol	54.16	52.78
Os04t0499300-01	Rice	plastid	52.86	50.5
GSMUA_Achr3P28040_001	Banana	cytosol	27.01	46.12
Solyc07g005780.1.1	Tomato	cytosol	25.71	44.0
GSMUA_Achr4P05970_001	Banana	cytosol	8.31	42.38
GSMUA_Achr4P12750_001	Banana	cytosol	56.88	37.76
HORVU6Hr1G023180.1	Barley	cytosol	13.77	35.93
CDX89056	Canola	cytosol	19.48	25.55
Os06t0520600-01	Rice	extracellular	19.09	20.68
CDX98293	Canola	cytosol	18.96	20.45
CDY42674	Canola	plastid	23.51	11.4
CDX89055	Canola	nucleus	10.26	8.7

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078H5K1	UniProt:A0A078H5K1	InterPro:ARM-type_fold	EnsemblPlants:CDY32742
ProteinID:CDY32742	ProteinID:CDY32742.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00052796001	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0004EDE2B1	SEG:seg	:

Description

BnaA02g08040DBnaA02g08040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5K1]

Coordinates

chrLK032298:-:426049..430069

Molecular Weight (calculated)

84271.0 Da

IEP (calculated)

8.363

GRAVY (calculated)

-0.465

Length

770 amino acids

Sequence
(BLAST)

001: MQQGDQSVLS LRPGGGRGNR IFGSSSSSSS ISFGSLSSSD LPLLRPHGGA PPSSFPFKGG DSRFDGRERV KYTREQLLEL KETAQLSDEI LKVKRETELE
101: LFGEEQTWAR GETVVSNVVP VQSASRFSEP DTRNWRSRSA AQPPPSGEER SWENLREARD SRYVEANQYN RQGQPRGQAS NQGGGPAPVL VKAEVPWSAR
201: RGNLSENDRV LKTVKGILNK LTPEKYDLLK GQLIDAGITS ADILKGVITL IFDKAVLEPT FCPMYAELCS DINDKLPTFP PEEPGGKEIT FKRVLLNICQ
301: EAFEGASNLR EELKQMSAPD QEAERSDKEK LLKLKTLGNI RLIGELLKQK MVPEKIVHHI VQELLGADEK ACPAEENVEA ICHFFKTIGK QLDGNMKSKR
401: INDAYFKRLQ DLSKNPHLEL RLRFMVQNII DLRSNGWVPR REEMKAKTIT EIHSDAEKNM GLRPGATANM RKGMASSSGP LSPGPIYPGG RPGAGGLMPG
501: MPGTRRMPGA PVGDNDNWEV PRTRSMSRRD GPGPLHSPAM GKSTSMNTRL LPQGSSGFMS GKTSALLQGS SSRPAEQPVQ RAAPVAVPAP VEKPQASAAP
601: KLSEEVLKSK TKSLLEEYFN VRLLDEAMQC LVDLASPSYH AEFVNEAITL ALEKSPPVVE PIASLLVYLL SKKVVTPKDL ETGCLMFGAM LDDVGIDLPK
701: APNNFGEIVG KLIVTGGVDF KFVREVLGKM EDDRFQKAVI DAAVRIVESS EQGKSLLASQ AADVEACRNL

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.