CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39236	Canola	cytosol	86.33	87.14
CDY69274	Canola	cytosol, mitochondrion	34.05	77.68
CDY28203	Canola	cytosol	52.81	77.1
CDX68687	Canola	plastid	76.14	75.94
CDY28211	Canola	mitochondrion	47.45	75.0
GSMUA_Achr4P06000_001	Banana	cytosol	3.49	63.41
AT4G30680.1	Thale cress	mitochondrion, plastid	21.31	60.46
GSMUA_Achr4P05990_001	Banana	cytosol	11.8	59.86
VIT_11s0037g00490.t01	Wine grape	plastid	62.06	58.31
KRH03030	Soybean	endoplasmic reticulum	61.66	58.3
KRH72326	Soybean	endoplasmic reticulum	60.99	58.04
CDY32742	Canola	plastid	58.98	57.14
CDY02774	Canola	plastid	58.45	56.48
Solyc07g005810.2.1	Tomato	plastid	58.18	56.14
KRH55033	Soybean	endoplasmic reticulum	57.91	55.74
KRH63081	Soybean	endoplasmic reticulum	57.77	55.68
PGSC0003DMT400020464	Potato	cytosol	57.64	55.63
PGSC0003DMT400029102	Potato	cytosol, plastid	58.04	55.51
Solyc12g009960.1.1	Tomato	nucleus	57.24	55.24
GSMUA_Achr9P22750_001	Banana	plastid	52.95	53.09
GSMUA_AchrUn_...	Banana	cytosol	53.08	53.08
Zm00001d025777_P007	Maize	plastid	55.76	52.99
HORVU2Hr1G086240.1	Barley	cytosol	53.35	52.86
EES12452	Sorghum	cytosol	55.76	52.59
Zm00001d003147_P001	Maize	plastid	54.96	52.16
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	54.83	51.9
TraesCS2A01G354900.1	Wheat	cytosol	54.96	51.9
TraesCS2B01G373600.1	Wheat	cytosol	54.83	51.84
Os02t0611500-01	Rice	cytosol	52.81	50.51
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.58	49.49
Os04t0499300-01	Rice	plastid	53.22	49.26
GSMUA_Achr3P28040_001	Banana	cytosol	27.21	45.01
GSMUA_Achr4P05970_001	Banana	cytosol	8.18	40.4
Solyc07g005780.1.1	Tomato	cytosol	23.73	39.33
HORVU6Hr1G023180.1	Barley	cytosol	14.75	37.29
GSMUA_Achr4P12750_001	Banana	cytosol	54.83	35.26
CDX89056	Canola	cytosol	20.11	25.55
Os06t0520600-01	Rice	extracellular	19.03	19.97
CDX98293	Canola	cytosol	18.5	19.33
CDY42674	Canola	plastid	23.86	11.21
CDX89055	Canola	nucleus	9.52	7.82

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078C5S9	InterPro:ARM-type_fold	EnsemblPlants:CDX72262	ProteinID:CDX72262
ProteinID:CDX72262.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00099733001	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0004EE6DE4	SEG:seg	:	:

Description

BnaC07g42840D

Coordinates

chrLK031796:-:334046..337511

Molecular Weight (calculated)

82202.7 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.549

Length

746 amino acids

Sequence
(BLAST)

001: MEQQGDRPVL SLRPGGGGRG GSRLFAHRPS SSSSSSDFTN GGDAPSFAVR RGEGHEILRF SREQLLQLKE AIQVSEDILK LSREISSDLF GEEQSWGRSE
101: SKPAAQAQNR FSETDNRDWH TRAPAPSPSR ERSREDQREP RDARTASGPP PVLVKAEVPW SAKRGTLSEK DQVLKTVKGI LNKMTPEKYD LLKGQLIDSG
201: ITSADILKGV IQLIFEKAVL EPTFCQMYAL LCFDINGKLP SFPSEEAGGK EITFKRVLLN NCQEQFEGAD KLKQEIRLMT DPEQEMDRRD KERMLKLRTL
301: GNIRLIGELL KQKMVPEKIV HHIVQELLGS DNKACPAEED VEALCQFFIT IGKQLDESPR SRGTNDTYFL RLKELAMHPM LAPRLRFMVR NVIDLRADNW
401: VPRREEMKAK KITEIHSEAE RNLGLRPGAM ANMRNNNNRG GADAGAADSG NFYGRSGTGG MMPGMPGARK MPGMPGARQM PGMPVTDDDG WEMARSRSMP
501: RGNRQNQQPA GRVQSPVIGK SPSVNSRLLP QGSGGLLAGR PSALLQGSGA EQPKPIPSPS KPAVEKPQPQ PQEAASPMAT TLDSEVLSRK TKSLLEEYFN
601: VRLMDEALQC VEELKSPAYN PELVKEAISL GLEKNPPCIE PVARLLEYLV SKKGLTTKDI GSGCLLYGSM LDDIGIDLPK APNNFGEILG SLVMANASDF
701: ETVEEILKKM EDDRFKKAVL DAVIKSVSES LLAAQAAKIE ACRSLV

Best Arabidopsis Sequence Match ( AT2G24050.1 )
(BLAST)

001: MQQQGEPSVL SLRPGGGGGK SRLFVPRFSS SSSFDLTNGG SEETPFPVKR ENSGERVRFS REEILQHRES VQVSDEILRR CKEIAVELFG EEQSWGNHAA
101: ESKITNHTQH RHTETDNRDW HSRSQIPTSG KEWLRDDPRE AKSTWQGSGP TPVLIKAEVP WSAKRGALSD KDRVVKSVKG ILNKLTPEKY ELLKGQLIDA
201: GITSADILKE VIQLIFENAI LQPTFCEMYA LLCFDINGQL PSFPSEEPGG KEITFKRVLL NNCQEAFEGA GKLKEEIRQM TNPDQEMERM DKEKMAKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVQELLG DDTKACPAEG DVEALCQFFI TIGKQLDDSP RSRGINDTYF GRLKELARHP QLELRLRFMV QNVVDLRANK
401: WVPRREEVKA KKINEIHSEA ERNLGMRPGA MASMRNNNNN RAAVSGAADG MGLGNILGRP GTGGMMPGMP GTRVMPMDED GWEMARTRSM PRGNRQTVQQ
501: PRFQPPPAIN KSLSVNSRLL PQGSGGLLNG GGRPSPLLQG NGSSSAPQAS KPIPTVEKPQ PRSQPQPQPQ AAPLANSLNA GELERKTKSL LEEYFSIRLV
601: DEALQCVEEL KSPSYHPELV KETISLGLEK NPPLVEPIAK LLKHLISKNV LTSKDLGAGC LLYGSMLDDI GIDLPKAPNS FGEFLGELVS AKVLDFELVR
701: DVLKKMEDEW FRKTVLNAVI KSVRECPSGQ SVLDSQAVEV EACQSLL

Arabidopsis Description

EIF(ISO)4G2Eukaryotic translation initiation factor isoform 4G-2 [Source:UniProtKB/Swiss-Prot;Acc:O82233]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.