CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69274	Canola	cytosol, mitochondrion	63.56	91.74
GSMUA_Achr4P06000_001	Banana	cytosol	5.51	63.41
GSMUA_Achr4P05990_001	Banana	cytosol	16.95	54.42
Bra011211.1-P	Field mustard	plastid	83.26	52.47
Bra011218.1-P	Field mustard	plastid	60.81	52.47
CDX68687	Canola	plastid	79.24	50.0
CDX72262	Canola	cytosol	75.0	47.45
CDY39236	Canola	cytosol	73.52	46.96
GSMUA_Achr3P28040_001	Banana	cytosol	38.98	40.8
CDY28203	Canola	cytosol	43.86	40.51
Solyc07g005780.1.1	Tomato	cytosol	38.35	40.22
KRH03030	Soybean	endoplasmic reticulum	64.19	38.4
KRH72326	Soybean	endoplasmic reticulum	62.71	37.76
KRH55033	Soybean	endoplasmic reticulum	61.23	37.29
KRH63081	Soybean	endoplasmic reticulum	60.59	36.95
Solyc07g005810.2.1	Tomato	plastid	60.17	36.74
GSMUA_Achr9P22750_001	Banana	plastid	57.63	36.56
VIT_11s0037g00490.t01	Wine grape	plastid	61.44	36.52
PGSC0003DMT400020464	Potato	cytosol	59.75	36.48
CDY32742	Canola	plastid	59.32	36.36
PGSC0003DMT400029102	Potato	cytosol, plastid	59.32	35.9
Solyc12g009960.1.1	Tomato	nucleus	58.69	35.83
CDY02774	Canola	plastid	58.47	35.75
GSMUA_AchrUn_...	Banana	cytosol	55.72	35.25
Os02t0611500-01	Rice	cytosol	57.84	35.0
Zm00001d003147_P001	Maize	plastid	57.84	34.73
Zm00001d025777_P007	Maize	plastid	57.42	34.52
Os04t0499300-01	Rice	plastid	58.69	34.37
EES12452	Sorghum	cytosol	57.42	34.26
HORVU2Hr1G086240.1	Barley	cytosol	53.6	33.6
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	55.72	33.38
TraesCS2B01G373600.1	Wheat	cytosol	55.72	33.33
TraesCS2A01G354900.1	Wheat	cytosol	55.72	33.29
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.75	31.94
GSMUA_Achr4P12750_001	Banana	cytosol	57.2	23.28
Os06t0520600-01	Rice	extracellular	28.39	18.85
CDX89056	Canola	cytosol	22.03	17.72
CDX98293	Canola	cytosol	25.64	16.95
AT4G30680.1	Thale cress	mitochondrion, plastid	7.2	12.93
HORVU6Hr1G023180.1	Barley	cytosol	6.78	10.85
GSMUA_Achr4P05970_001	Banana	cytosol	2.75	8.61
CDY42674	Canola	plastid	28.6	8.5
CDX89055	Canola	nucleus	10.17	5.29

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078GRW2	UniProt:A0A078GRW2	InterPro:ARM-type_fold	EnsemblPlants:CDY28211
ProteinID:CDY28211	ProteinID:CDY28211.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00039937001	InterPro:IPR016021	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02854
PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543	SUPFAM:SSF48371	UniParc:UPI0004EE3ACF	SEG:seg

Description

BnaA01g06380DBnaA01g06380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRW2]

Coordinates

chrLK032216:-:300860..303471

Molecular Weight (calculated)

52514.0 Da

IEP (calculated)

7.505

GRAVY (calculated)

-0.564

Length

472 amino acids

Sequence
(BLAST)

001: MLSLRPGGGR GGSIFAPRSA LSSSSSSDLT NAEDAPSFAV KRGDSRFEGH EIVRFTREQL LQLKEGSQVS DEVLKLGKDI ASDLFGEEQS WGRSENKPAA
101: QVQNRYSETD NRDWHTRAPI PSPSKDRSRE DQRESRDAYS GSIQGSGPPP ALVKAEVPWS AKRGTLSEKD QVLKTVKGIL NKMTPEKYDL LKGQLIDSGI
201: TSADILKGVI QLIFEKAVLE PTFCQMYALL CFDINGKLPS FPSEEAGGKE ITFKRVLLNN CQEQFEGADK LKEEVRLMTD PAQEMERKDK ERMAKLRTLG
301: NIRLIGELLK QKMVPEKILH HIVQELLGSD DKDCPAEEDV EALCQVFITI GKQLDESLRS RSINDMYFTR LKELAVHPML EPRLRFMVRN VVDLRANKWV
401: PRREEMKAKK ITEIHSEAEK TLGLRPGAMS NMRNNNSRAG ADADILGSGN FLGRSGIGGM MPGMPGEQVA VG

Best Arabidopsis Sequence Match ( AT1G62410.1 )
(BLAST)

001: MANLCPFLSL QRLTTLIFDK AVLEPTFCPM YAQLCFDIRH KMPRFPPSAP KTDEISFKRV LLNTCQKVFE RTDDLSEEIR KMNAPDQEAE REDEVRLLNL
101: RTLGNLRFCG ELFLKRMLTE KVVLAIGQKL LEDAEQMCPS EEKIIAICLF LNTVGKKLDS LNSKLMNEIL RRLKNLSNHP QLVMSLRLMV GKIIHLHSIG
201: IKSDPINMWE DSKCGYILGI ISM

Arabidopsis Description

MIF4G domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HYS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.