CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94108
EES04495
EES04609
EES07849
KXG22761
KXG29825
OQU77017
OQU84655

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	EES04495	AT1G27360.1	21798944
AT2G24050.1	EES04609	AT1G27360.1	21798944
AT2G24050.1	OQU77017	AT1G27360.1	21798944
AT2G24050.1	EES07849	AT3G08530.1	21798944
AT2G24050.1	KXG22761	AT3G08530.1	21798944
AT2G24050.1	EER94108	AT5G35620.1	21798944
AT5G57870.1	KXG29825	AT1G72730.1	21798944
AT5G57870.1	OQU84655	AT1G72730.1	21798944
AT5G57870.1	EES07849	AT3G08530.1	21798944
AT5G57870.1	KXG22761	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003147_P001	Maize	plastid	92.67	93.26
Zm00001d025777_P007	Maize	plastid	91.53	92.23
TraesCS2B01G373600.1	Wheat	cytosol	78.89	79.09
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	78.38	78.68
TraesCS2A01G354900.1	Wheat	cytosol	78.51	78.61
HORVU2Hr1G086240.1	Barley	cytosol	74.46	78.22
Os04t0499300-01	Rice	plastid	78.0	76.55
GSMUA_Achr4P06000_001	Banana	cytosol	3.79	73.17
VIT_11s0037g00490.t01	Wine grape	plastid	62.71	62.47
GSMUA_Achr4P05990_001	Banana	cytosol	11.38	61.22
Solyc07g005810.2.1	Tomato	plastid	59.42	60.8
GSMUA_AchrUn_...	Banana	cytosol	57.02	60.46
Solyc12g009960.1.1	Tomato	nucleus	58.91	60.28
PGSC0003DMT400020464	Potato	cytosol	58.66	60.03
PGSC0003DMT400029102	Potato	cytosol, plastid	59.04	59.87
KRH55033	Soybean	endoplasmic reticulum	58.66	59.87
CDY69274	Canola	cytosol, mitochondrion	24.65	59.63
KRH72326	Soybean	endoplasmic reticulum	58.79	59.31
KRH63081	Soybean	endoplasmic reticulum	58.03	59.3
GSMUA_Achr9P22750_001	Banana	plastid	55.63	59.14
KRH03030	Soybean	endoplasmic reticulum	58.79	58.94
CDY28211	Canola	mitochondrion	34.26	57.42
AT5G57870.1	Thale cress	plastid	56.26	57.05
CDY39236	Canola	cytosol	52.97	56.7
Bra024051.1-P	Field mustard	cytosol	53.35	56.42
CDY32742	Canola	plastid	54.87	56.36
Bra020407.1-P	Field mustard	plastid	54.74	56.23
CDY28203	Canola	cytosol	36.16	55.97
CDX72262	Canola	cytosol	52.59	55.76
CDY02774	Canola	plastid	54.24	55.57
AT2G24050.1	Thale cress	plastid	52.21	55.29
CDX68687	Canola	plastid	52.21	55.21
Bra011211.1-P	Field mustard	plastid	51.96	54.87
Bra011218.1-P	Field mustard	plastid	37.93	54.84
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.19	54.81
HORVU6Hr1G023180.1	Barley	cytosol	19.85	53.22
GSMUA_Achr3P28040_001	Banana	cytosol	28.32	49.67
GSMUA_Achr4P05970_001	Banana	cytosol	8.85	46.36
Solyc07g005780.1.1	Tomato	cytosol	24.78	43.56
AT4G30680.1	Thale cress	mitochondrion, plastid	14.41	43.35
AT1G62410.1	Thale cress	cytosol	12.14	43.05
GSMUA_Achr4P12750_001	Banana	cytosol	61.44	41.9
KXG36457	Sorghum	cytosol	25.16	10.87
KXG26815	Sorghum	nucleus	24.02	10.29

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	EntrezGene:8060210	InterPro:ARM-type_fold	UniProt:C5YBI6	ncoils:Coil
EnsemblPlants:EES12452	ProteinID:EES12452	ProteinID:EES12452.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0009615	GO:GO:0009987	GO:GO:0046740	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI
InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253
PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544	EnsemblPlantsGene:SORBI_3006G136400	SUPFAM:SSF48371	unigene:Sbi.1648
UniParc:UPI0001A87692	RefSeq:XP_002448124.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:49892640..49897879

Molecular Weight (calculated)

86904.3 Da

IEP (calculated)

8.190

GRAVY (calculated)

-0.475

Length

791 amino acids

Sequence
(BLAST)

001: MQPDQPVISL RPGGGGGGPR AGRLFSPAFA TSGSGDFLRP HGGGASGISK IGESHFEPRE RVRYTRDQLL ELREIVDVSE DILRIKQEID VELHGEDQSW
101: VRNDSAIQGQ AQAQAQAQAQ AQNRYAETDN RDWRARSAQP PPANEEKSWD NIREAKEAYA SSGRQQEQAN RQDQLSSQFA SKAQVGPTPA LIKAEVPWSA
201: RRGNLSEKER VLKTVKGILN KLTPEKFDLL KGQLMEAGIT TADILKDVIS LIFEKAVFEP TFCPMYAQLC SDLNVKLPTF SPEEPDGKEI TFKRVLLNNC
301: QEAFEGASSL RAEIAKLTGP DQEMERRDKE RLVKLRTLGN IRLIGELLKQ KMVPEKIVHH IVMELLGSGP DKKPCPEEED VEAICHFFNT IGKQLDENPK
401: SRRINDTYFI QMKELTMNPQ LAPRLRFMVR DVIELRSNNW VPRREEIKAK TISEIHSEAE KNLGLRPGAA SVIRNGRSSP GGPLSPGGGF PMNRPGTGGM
501: MPGMPGSRKM PGMPGLDNDN WEVPRSRSMP RGDSIRNQGP LLNRPSTVQK ASSINTRLLP QGSGAALIGK SALLGTGVPP SRPLSFTPGP APAQTTPSPK
601: PLIAAPAVAP APDKPASAPK GNSAELQKKT IALLEEYFGI RILDEAQQCI EELQSPGYYP EIVKEAVNLA LDKGTNFVDP LIRLLEHLYT KKIFKTQDLE
701: AGCLLYGALL DDIGIDLPKA PTQFGEIIAR LTLLGALRFE AVEEVLKKME DTFYRKQVFN AVMKTLEANP SGQAILGSQA AVIDACNSLL K

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.