CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91468
EER93008
EES12452
KXG29701
OQU80925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	EER91468	AT1G17880.1	15716105
AT5G35620.1	EER93008	AT1G17880.1	15716105
AT5G35620.1	KXG29701	AT3G45140.1	11117257
AT5G35620.1	OQU80925	AT3G45140.1	11117257
AT5G35620.1	EES12452	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032775_P002	Maize	cytosol, extracellular	90.48	90.48
Os10t0467600-01	Rice	cytosol, plastid	77.62	79.13
TraesCS1B01G167100.1	Wheat	cytosol	75.71	76.08
HORVU1Hr1G039260.2	Barley	cytosol	75.71	75.71
TraesCS1D01G146500.1	Wheat	golgi	74.29	74.64
TraesCS1A01G149200.1	Wheat	cytosol	74.76	73.71
GSMUA_Achr4P25000_001	Banana	cytosol	66.19	72.4
VIT_05s0049g01770.t01	Wine grape	cytosol	66.67	68.63
PGSC0003DMT400044186	Potato	cytosol	64.76	68.0
Solyc09g090580.2.1	Tomato	nucleus	63.81	67.0
KRG90357	Soybean	endoplasmic reticulum	63.33	66.5
KRH33614	Soybean	cytosol	64.29	65.85
GSMUA_Achr5P12940_001	Banana	cytosol	64.76	65.07
Bra039484.1-P	Field mustard	cytosol	60.48	64.14
CDY38545	Canola	cytosol	60.0	63.64
AT5G35620.1	Thale cress	cytosol	59.52	63.13
Bra035393.1-P	Field mustard	cytosol	59.05	62.31
CDY33686	Canola	cytosol	58.57	61.81
CDX84118	Canola	cytosol	58.57	61.5
CDY49364	Canola	cytosol	58.57	61.5
Bra035531.1-P	Field mustard	cytosol	58.57	61.5
CDY06456	Canola	cytosol	56.67	61.34
CDX74645	Canola	cytosol	59.52	54.82
EES02138	Sorghum	cytosol	44.76	42.73
EER92511	Sorghum	cytosol	31.9	29.26

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	EntrezGene:8076610	UniProt:C5WZC3	EnsemblPlants:EER94108	ProteinID:EER94108
ProteinID:EER94108.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006412	GO:GO:0006413	GO:GO:0006950	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009987	GO:GO:0019538
GO:GO:0050687	InterPro:IPR023398	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12
EnsemblPlantsGene:SORBI_3001G224400	SUPFAM:SSF55418	unigene:Sbi.5706	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS
UniParc:UPI0001A8292A	RefSeq:XP_002467110.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:21490354..21494439

Molecular Weight (calculated)

23595.6 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.565

Length

210 amino acids

Sequence
(BLAST)

001: MAEVEVPAAA VATTIPEAAE ATEGGAAAEA KGPHKLHRQW TFWYDIQSKP KPGAAWGTSL KKAYTFDTVE EFWSLYDQIF RPSKLSGNAD FHLFKAGVEP
101: KWEDPECANG GKWTVPCNRK ATFENMWLET LMALIGEQFD ETEDICGIVA SVRARGDKLA LWTRTASNEA VQVNIGKKWK DVIDYNDKIT YTFHDDSRRE
201: KPSRGGRYTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.