Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49364 | Canola | cytosol | 98.0 | 98.0 |
| Bra035531.1-P | Field mustard | cytosol | 97.5 | 97.5 |
| CDY38545 | Canola | cytosol | 79.5 | 80.3 |
| CDY33686 | Canola | cytosol | 79.5 | 79.9 |
| CDY06456 | Canola | cytosol | 76.5 | 78.87 |
| AT5G35620.1 | Thale cress | cytosol | 76.5 | 77.27 |
| CDX74645 | Canola | cytosol | 79.5 | 69.74 |
| GSMUA_Achr4P25000_001 | Banana | cytosol | 63.0 | 65.62 |
| PGSC0003DMT400044186 | Potato | cytosol | 64.5 | 64.5 |
| VIT_05s0049g01770.t01 | Wine grape | cytosol | 65.0 | 63.73 |
| Os10t0467600-01 | Rice | cytosol, plastid | 63.0 | 61.16 |
| Solyc09g090580.2.1 | Tomato | nucleus | 61.0 | 61.0 |
| Zm00001d032775_P002 | Maize | cytosol, extracellular | 61.5 | 58.57 |
| EER94108 | Sorghum | cytosol | 61.5 | 58.57 |
| KRG90357 | Soybean | endoplasmic reticulum | 58.0 | 58.0 |
| KRH33614 | Soybean | cytosol | 58.5 | 57.07 |
| GSMUA_Achr5P12940_001 | Banana | cytosol | 59.5 | 56.94 |
| TraesCS1B01G167100.1 | Wheat | cytosol | 59.0 | 56.46 |
| TraesCS1D01G146500.1 | Wheat | golgi | 58.0 | 55.5 |
| TraesCS1A01G149200.1 | Wheat | cytosol | 58.0 | 54.46 |
| HORVU1Hr1G039260.2 | Barley | cytosol | 57.0 | 54.29 |
| Zm00001d014065_P001 | Maize | cytosol, extracellular | 58.5 | 54.17 |
| CDX90426 | Canola | cytosol | 21.0 | 45.65 |
| CDY01513 | Canola | extracellular | 21.0 | 44.21 |
| CDX78824 | Canola | cytosol | 45.0 | 39.47 |
| CDY61674 | Canola | cytosol | 44.0 | 38.6 |
| CDX76547 | Canola | cytosol | 45.0 | 38.46 |
| CDY08883 | Canola | cytosol | 44.0 | 37.61 |
| CDX99836 | Canola | cytosol | 40.0 | 32.26 |
| CDX94676 | Canola | cytosol | 39.0 | 31.71 |
| CDY44305 | Canola | cytosol | 38.5 | 31.56 |
| CDY48345 | Canola | cytosol | 38.5 | 31.05 |
| CDY38487 | Canola | cytosol | 29.0 | 27.1 |
| CDX78777 | Canola | cytosol | 29.5 | 27.06 |
| CDX70795 | Canola | cytosol | 29.0 | 26.61 |
| CDY53257 | Canola | cytosol | 28.5 | 25.45 |
| CDY49143 | Canola | cytosol | 28.5 | 25.45 |
| CDY45630 | Canola | cytosol | 28.5 | 25.45 |
| CDY02645 | Canola | cytosol | 28.5 | 25.45 |
Protein Annotations
| MapMan:17.4.2.4.1 | Gene3D:3.30.760.10 | GO:A0A078D9V7 | EnsemblPlants:CDX84118 | ProteinID:CDX84118 | ProteinID:CDX84118.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00140117001 |
| InterPro:IPR023398 | PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 | SUPFAM:SSF55418 |
| InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI0001CA9F0C | : | : |
Description
BnaC08g07950D
Coordinates
chrLK031835:+:1783538..1784834
Molecular Weight (calculated)
22762.8 Da
IEP (calculated)
5.735
GRAVY (calculated)
-0.545
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEDVNEAL AAAEVTAIES TEKQQPPHKL ERKWSFWFDN QLKPKQGAAW GASLRKACTF DTVEDFWGLH ETIFVPSRLT PNADIHMFKA GVEPKWEDPE
101: CANGGKWTYV VTNNRKQAFD KAWLETLMAL VGEQFDEADE ICGVVASVRQ KQDKLSLWTR TKSNEAVLMG IGKKWKEILD VTDKIAFTNH DDARRSRFSV
101: CANGGKWTYV VTNNRKQAFD KAWLETLMAL VGEQFDEADE ICGVVASVRQ KQDKLSLWTR TKSNEAVLMG IGKKWKEILD VTDKIAFTNH DDARRSRFSV
001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV
Arabidopsis Description
EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.