Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18040.1 | CDX92291 | AT4G01580.1 | 21798944 |
| AT4G18040.1 | CDX99294 | AT4G01580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90426 | Canola | cytosol | 92.63 | 95.65 |
| Bra012622.1-P | Field mustard | cytosol | 95.79 | 69.47 |
| AT4G18040.1 | Thale cress | cytosol | 95.79 | 38.72 |
| CDY08883 | Canola | cytosol | 94.74 | 38.46 |
| CDX76547 | Canola | cytosol | 93.68 | 38.03 |
| CDX78824 | Canola | cytosol | 88.42 | 36.84 |
| CDY61674 | Canola | cytosol | 88.42 | 36.84 |
| KRH21134 | Soybean | cytosol | 77.89 | 31.22 |
| VIT_10s0003g02250.t01 | Wine grape | cytosol | 75.79 | 30.51 |
| Zm00001d041682_P001 | Maize | cytosol, extracellular | 69.47 | 30.28 |
| Solyc03g005870.2.1 | Tomato | cytosol, nucleus | 72.63 | 29.87 |
| TraesCS3D01G527800.1 | Wheat | cytosol, golgi | 67.37 | 29.77 |
| TraesCS3B01G591300.1 | Wheat | cytosol | 67.37 | 29.77 |
| TraesCS3A01G521500.1 | Wheat | cytosol | 67.37 | 29.77 |
| HORVU3Hr1G113940.2 | Barley | cytosol | 67.37 | 29.77 |
| Zm00001d041973_P001 | Maize | cytosol | 68.42 | 29.55 |
| EES02138 | Sorghum | cytosol | 68.42 | 29.55 |
| PGSC0003DMT400034911 | Potato | cytosol | 71.58 | 29.44 |
| Os01t0970400-01 | Rice | cytosol | 69.47 | 29.07 |
| GSMUA_Achr3P02580_001 | Banana | cytosol | 64.21 | 26.64 |
| CDY44305 | Canola | cytosol | 65.26 | 25.41 |
| GSMUA_Achr4P12820_001 | Banana | cytosol | 65.26 | 25.2 |
| CDX94676 | Canola | cytosol | 63.16 | 24.39 |
| CDX99836 | Canola | cytosol | 62.11 | 23.79 |
| CDY06456 | Canola | cytosol | 46.32 | 22.68 |
| CDY48345 | Canola | cytosol | 58.95 | 22.58 |
| Solyc02g021550.2.1 | Tomato | cytosol | 43.16 | 22.16 |
| CDY38545 | Canola | cytosol | 45.26 | 21.72 |
| KRH11115 | Soybean | cytosol | 52.63 | 21.37 |
| CDY33686 | Canola | cytosol | 44.21 | 21.11 |
| CDY49364 | Canola | cytosol | 44.21 | 21.0 |
| CDX84118 | Canola | cytosol | 44.21 | 21.0 |
| CDX74645 | Canola | cytosol | 43.16 | 17.98 |
| CDX70795 | Canola | cytosol | 29.47 | 12.84 |
| CDY38487 | Canola | cytosol | 28.42 | 12.62 |
| CDX78777 | Canola | cytosol | 27.37 | 11.93 |
| CDY02645 | Canola | cytosol | 27.37 | 11.61 |
| CDY53257 | Canola | cytosol | 27.37 | 11.61 |
| CDY49143 | Canola | cytosol | 27.37 | 11.61 |
| CDY45630 | Canola | cytosol | 27.37 | 11.61 |
Protein Annotations
| Gene3D:3.30.760.10 | MapMan:35.1 | GO:A0A078EPU8 | EnsemblPlants:CDY01513 | ProteinID:CDY01513 | ProteinID:CDY01513.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00112534001 |
| InterPro:IPR023398 | PFAM:PF01652 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 | SUPFAM:SSF55418 | InterPro:TIF_eIF4e-like |
| InterPro:TIF_eIF_4E | UniParc:UPI0004EE9BEB | : | : | : | : |
Description
BnaC07g35030D
Coordinates
chrLK031927:-:298826..299531
Molecular Weight (calculated)
10821.7 Da
IEP (calculated)
7.513
GRAVY (calculated)
-0.540
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MNFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI GRQWKEFLDY TNSIGFIIHE DAKKLDRNAK SAYTA
001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
Arabidopsis Description
EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.