Factsheet for Solyc03g005870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g054630.2.1
Solyc08g068540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18040.1	Solyc07g054630.2.1	AT4G01580.1	21798944
AT4G18040.1	Solyc08g068540.2.1	AT4G01580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034911	Potato	cytosol	74.46	74.46
CDY01513	Canola	extracellular	29.87	72.63
Bra012622.1-P	Field mustard	cytosol	40.69	71.76
CDX90426	Canola	cytosol	28.14	70.65
KRH21134	Soybean	cytosol	64.5	62.87
VIT_10s0003g02250.t01	Wine grape	cytosol	63.64	62.29
Solyc02g021550.2.1	Tomato	cytosol	49.35	61.62
AT4G18040.1	Thale cress	cytosol	61.04	60.0
CDY61674	Canola	cytosol	58.44	59.21
Bra013283.1-P	Field mustard	cytosol	57.58	58.33
CDX78824	Canola	cytosol	57.14	57.89
Bra021026.1-P	Field mustard	cytosol	58.01	57.27
CDX76547	Canola	cytosol	57.58	56.84
CDY08883	Canola	cytosol	57.58	56.84
KRH11115	Soybean	cytosol	51.52	50.85
CDX99836	Canola	cytosol	53.25	49.6
AT1G29550.1	Thale cress	cytosol	51.52	49.58
CDY44305	Canola	cytosol	51.52	48.77
Bra030147.1-P	Field mustard	cytosol	51.52	48.77
AT1G29590.1	Thale cress	cytosol	50.22	48.33
Bra032325.1-P	Field mustard	cytosol	50.65	47.18
Solyc09g090580.2.1	Tomato	nucleus	40.69	47.0
CDX94676	Canola	cytosol	49.35	46.34
CDY48345	Canola	cytosol	49.35	45.97
Solyc10g080660.1.1	Tomato	cytosol, nucleus	25.54	26.46

Protein Annotations

MapMan:17.4.2.3.1	Gene3D:3.30.760.10	ProteinID:ACV74551.1	EMBL:AY723733	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	PFAM:PF01652	PANTHER:PTHR11960
PANTHER:PTHR11960:SF12	UniProt:Q4VQY3	SUPFAM:SSF55418	EnsemblPlantsGene:Solyc03g005870.2	EnsemblPlants:Solyc03g005870.2.1	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	UniParc:UPI000052D516	SEG:seg	:	:	:

Description

Eukaryotic translation initiation factor 4E [Source:UniProtKB/TrEMBL;Acc:Q4VQY3]

Coordinates

chr3:+:590058..593520

Molecular Weight (calculated)

26043.3 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.577

Length

231 amino acids

Sequence
(BLAST)

001: MAAAEMERTM SFDAAEKLKA ADGGGGEVDD ELEEGEIVEE SNDTASYLGK EITVKHPLEH SWTFWFDNPT TKSRQTAWGS SLRNVYTFST VEDFWGAYNN
101: IHHPSKLIMG ADFHCFKHKI EPKWEDPVCA NGGTWKMSFS KGKSDTSWLY TLLAMIGHQF DHGDEICGAV VSVRAKGEKI ALWTKNAANE TAQVSIGKQW
201: KQFLDYSDSV GFIFHDDAKR LDRNAKNRYT V

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.