Factsheet for VIT_10s0003g02250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01513	Canola	extracellular	30.51	75.79
Bra012622.1-P	Field mustard	cytosol	41.95	75.57
CDX90426	Canola	cytosol	29.24	75.0
KRH21134	Soybean	cytosol	69.49	69.2
Solyc02g021550.2.1	Tomato	cytosol	52.54	67.03
Os01t0970400-01	Rice	cytosol	63.98	66.52
Zm00001d041682_P001	Maize	cytosol, extracellular	61.02	66.06
EES02138	Sorghum	cytosol	59.75	64.09
PGSC0003DMT400034911	Potato	cytosol	62.71	64.07
AT4G18040.1	Thale cress	cytosol	63.56	63.83
Zm00001d041973_P001	Maize	cytosol	59.32	63.64
Solyc03g005870.2.1	Tomato	cytosol, nucleus	62.29	63.64
Bra013283.1-P	Field mustard	cytosol	61.02	63.16
CDY61674	Canola	cytosol	60.59	62.72
HORVU3Hr1G113940.2	Barley	cytosol	56.78	62.33
TraesCS3D01G527800.1	Wheat	cytosol, golgi	56.78	62.33
TraesCS3B01G591300.1	Wheat	cytosol	56.78	62.33
TraesCS3A01G521500.1	Wheat	cytosol	56.78	62.33
CDX78824	Canola	cytosol	60.17	62.28
Bra021026.1-P	Field mustard	cytosol	61.44	61.97
CDX76547	Canola	cytosol	61.02	61.54
GSMUA_Achr3P02580_001	Banana	cytosol	59.32	61.14
CDY08883	Canola	cytosol	60.17	60.68
KRH11115	Soybean	cytosol	58.05	58.55
GSMUA_Achr4P12820_001	Banana	cytosol	55.93	53.66
AT1G29550.1	Thale cress	cytosol	53.81	52.92
CDX99836	Canola	cytosol	54.66	52.02
AT1G29590.1	Thale cress	cytosol	52.12	51.25
VIT_05s0049g01770.t01	Wine grape	cytosol	44.07	50.98
Bra030147.1-P	Field mustard	cytosol	52.54	50.82
CDY44305	Canola	cytosol	52.54	50.82
CDX94676	Canola	cytosol	52.54	50.41
Bra032325.1-P	Field mustard	cytosol	51.69	49.19
CDY48345	Canola	cytosol	50.85	48.39
VIT_08s0007g07290.t01	Wine grape	cytosol	25.85	27.11

Protein Annotations

EntrezGene:100262414	wikigene:100262414	MapMan:17.4.2.3.1	Gene3D:3.30.760.10	ProteinID:CCB55739	ProteinID:CCB55739.1
UniProt:F6HMF0	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023398	EntrezGene:LOC100262414	wikigene:LOC100262414	PFAM:PF01652	ScanProsite:PS00813
PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	TIGR:TC62761	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E
InterPro:TIF_eIF_4E_CS	UniParc:UPI00015CC4CA	ArrayExpress:VIT_10s0003g02250	EnsemblPlantsGene:VIT_10s0003g02250	EnsemblPlants:VIT_10s0003g02250.t01	unigene:Vvi.7363
RefSeq:XP_002267488	RefSeq:XP_002267488.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:4024202..4029288

Molecular Weight (calculated)

26666.9 Da

IEP (calculated)

5.331

GRAVY (calculated)

-0.636

Length

236 amino acids

Sequence
(BLAST)

001: MGDTVVEELP RSATTEDQGS THNPNPRPHG DDEEDLEEGE IVVDDASASL KQSAAITHQP HPLEHSWTFW FDNPSAKSKQ AAWGSSMRPI YTFSNVEEFW
101: SIYNNIHHPS KLAVGADFHC FKHKIEPKWE DPVCANGGKW TVTFAKGKSD TCWLYTLLAM IGEQFDHGDE ICGAVINVRA RQEKIALWTK NASNEAAQLS
201: IGKQWKEFLD YSESIGFIFH EDAKKLDRAA KNRYTI

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.