Factsheet for GSMUA_Achr4P12820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90426	Canola	cytosol	25.61	68.48
Bra012622.1-P	Field mustard	cytosol	35.77	67.18
CDY01513	Canola	extracellular	25.2	65.26
Zm00001d041682_P001	Maize	cytosol, extracellular	57.32	64.68
Zm00001d041973_P001	Maize	cytosol	56.91	63.64
EES02138	Sorghum	cytosol	56.5	63.18
TraesCS3D01G527800.1	Wheat	cytosol, golgi	54.47	62.33
TraesCS3B01G591300.1	Wheat	cytosol	54.47	62.33
TraesCS3A01G521500.1	Wheat	cytosol	54.47	62.33
GSMUA_Achr3P02580_001	Banana	cytosol	56.91	61.14
Os01t0970400-01	Rice	cytosol	55.69	60.35
HORVU3Hr1G113940.2	Barley	cytosol	52.44	60.0
Solyc02g021550.2.1	Tomato	cytosol	45.12	60.0
Bra013283.1-P	Field mustard	cytosol	53.25	57.46
CDY61674	Canola	cytosol	53.25	57.46
CDX78824	Canola	cytosol	52.85	57.02
VIT_10s0003g02250.t01	Wine grape	cytosol	53.66	55.93
KRH21134	Soybean	cytosol	53.25	55.27
CDY08883	Canola	cytosol	52.44	55.13
AT4G18040.1	Thale cress	cytosol	52.44	54.89
Bra021026.1-P	Field mustard	cytosol	52.03	54.7
CDX76547	Canola	cytosol	51.63	54.27
PGSC0003DMT400034911	Potato	cytosol	50.81	54.11
GSMUA_Achr4P25000_001	Banana	cytosol	38.21	48.96
KRH11115	Soybean	cytosol	45.12	47.44
AT1G29550.1	Thale cress	cytosol	45.94	47.08
GSMUA_Achr5P12940_001	Banana	cytosol	39.02	45.93
AT1G29590.1	Thale cress	cytosol	44.72	45.83
CDX94676	Canola	cytosol	45.53	45.53
CDY44305	Canola	cytosol	45.12	45.49
CDX99836	Canola	cytosol	45.53	45.16
Bra030147.1-P	Field mustard	cytosol	43.9	44.26
Bra032325.1-P	Field mustard	cytosol	43.9	43.55
CDY48345	Canola	cytosol	43.09	42.74
GSMUA_Achr4P11110_001	Banana	cytosol	25.61	27.88
GSMUA_Achr3P29580_001	Banana	cytosol	25.2	27.43

Protein Annotations

MapMan:17.4.2.3.1	Gene3D:3.30.760.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G12820_001	EnsemblPlants:GSMUA_Achr4P12820_001	EnsemblPlants:GSMUA_Achr4T12820_001	InterPro:IPR023398
UniProt:M0SNE7	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418
InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI00029480B3	SEG:seg	:

Description

Eukaryotic translation initiation factor 4E-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12820_001]

Coordinates

chr4:+:9508315..9513209

Molecular Weight (calculated)

27410.7 Da

IEP (calculated)

5.058

GRAVY (calculated)

-0.697

Length

246 amino acids

Sequence
(BLAST)

001: MAVENGDGGM GNATSEAADA EVERQEAEDE EIVGDSPPSG MEQRRAGRED EEGAGDGVDG GGERRKQMAI HPLEHSWTFW FDNPSGKSKH VAWGSSIRPV
101: HTFSTVEDFW GLYNNINRPS KLAIGADFHC FKYGIEPKWE DPVCANGGKW TLSCSRGKVD NLWLHTLLAM IGEQFDHGDY ICGAVVNVRA KQEKISIWTR
201: NGLDAAAQTS IGRQWKEHLD YNETIGFILH DDAKKHDRFA KSTYQV

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.