Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400047299 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18040.1 | PGSC0003DMT400047299 | AT4G01580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g005870.2.1 | Tomato | cytosol, nucleus | 74.46 | 74.46 |
| CDY01513 | Canola | extracellular | 29.44 | 71.58 |
| Bra012622.1-P | Field mustard | cytosol | 40.26 | 70.99 |
| CDX90426 | Canola | cytosol | 27.71 | 69.57 |
| Zm00001d041973_P001 | Maize | cytosol | 61.9 | 65.0 |
| EES02138 | Sorghum | cytosol | 61.9 | 65.0 |
| Zm00001d041682_P001 | Maize | cytosol, extracellular | 61.04 | 64.68 |
| TraesCS3D01G527800.1 | Wheat | cytosol, golgi | 58.44 | 62.79 |
| TraesCS3B01G591300.1 | Wheat | cytosol | 58.44 | 62.79 |
| TraesCS3A01G521500.1 | Wheat | cytosol | 58.44 | 62.79 |
| HORVU3Hr1G113940.2 | Barley | cytosol | 58.44 | 62.79 |
| VIT_10s0003g02250.t01 | Wine grape | cytosol | 64.07 | 62.71 |
| Os01t0970400-01 | Rice | cytosol | 61.04 | 62.11 |
| KRH21134 | Soybean | cytosol | 61.04 | 59.49 |
| GSMUA_Achr3P02580_001 | Banana | cytosol | 58.87 | 59.39 |
| CDY61674 | Canola | cytosol | 58.01 | 58.77 |
| AT4G18040.1 | Thale cress | cytosol | 59.74 | 58.72 |
| Bra013283.1-P | Field mustard | cytosol | 57.14 | 57.89 |
| CDX78824 | Canola | cytosol | 55.84 | 56.58 |
| Bra021026.1-P | Field mustard | cytosol | 56.71 | 55.98 |
| CDY08883 | Canola | cytosol | 56.28 | 55.56 |
| CDX76547 | Canola | cytosol | 56.28 | 55.56 |
| KRH11115 | Soybean | cytosol | 52.81 | 52.14 |
| AT1G29550.1 | Thale cress | cytosol | 52.81 | 50.83 |
| GSMUA_Achr4P12820_001 | Banana | cytosol | 54.11 | 50.81 |
| AT1G29590.1 | Thale cress | cytosol | 51.52 | 49.58 |
| CDX99836 | Canola | cytosol | 51.95 | 48.39 |
| Bra030147.1-P | Field mustard | cytosol | 50.65 | 47.95 |
| CDY44305 | Canola | cytosol | 50.65 | 47.95 |
| PGSC0003DMT400044186 | Potato | cytosol | 40.69 | 47.0 |
| Bra032325.1-P | Field mustard | cytosol | 50.22 | 46.77 |
| CDX94676 | Canola | cytosol | 49.35 | 46.34 |
| CDY48345 | Canola | cytosol | 48.92 | 45.56 |
| PGSC0003DMT400060836 | Potato | cytosol | 25.97 | 26.91 |
Protein Annotations
| MapMan:17.4.2.3.1 | Gene3D:3.30.760.10 | ProteinID:AEW07371 | ProteinID:AEW07371.1 | ProteinID:AEX01233 | ProteinID:AEX01233.1 |
| ProteinID:AEX01234 | ProteinID:AEX01234.1 | ProteinID:AEX01235 | ProteinID:AEX01235.1 | ProteinID:CBJ34334 | ProteinID:CBJ34334.1 |
| ProteinID:CBJ34335 | ProteinID:CBJ34335.1 | EMBL:FN666435 | EMBL:FN666436 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023398 | EMBL:JF927213 | EMBL:JN831440 |
| EMBL:JN831441 | EMBL:JN831442 | UniProt:M1B1I1 | PFAM:PF01652 | EnsemblPlantsGene:PGSC0003DMG400013421 | PGSC:PGSC0003DMG400013421 |
| EnsemblPlants:PGSC0003DMT400034911 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 | SUPFAM:SSF55418 | InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E |
| UniParc:UPI000294E139 | SEG:seg | : | : | : | : |
Description
Translation initiation factor eIF4E [Source:PGSC_GENE;Acc:PGSC0003DMG400013421]
Coordinates
chr3:+:831240..836333
Molecular Weight (calculated)
25970.2 Da
IEP (calculated)
5.777
GRAVY (calculated)
-0.544
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEMERTT SFDAAEKLKA ADGGGGEVDD ELEEGEIVEE SNDTASYLGK EITVKHPLEH SWTFWFDSPI AKSRQTAWGS SLRNVYTFST VEDFWGAYNN
101: IHHPSKLVMG ADFHCFKHKI EPKWEDPVCA NGGTWKMSFL KGKSDTSWLY TLLAMIGHQF DHGDEICGAV VSVRSKGEKI ALWTKNAANE TAQVSIGKQW
201: KQFLDHSDSV GFIFHDDAKR LDRNAKNRYT V
101: IHHPSKLVMG ADFHCFKHKI EPKWEDPVCA NGGTWKMSFL KGKSDTSWLY TLLAMIGHQF DHGDEICGAV VSVRSKGEKI ALWTKNAANE TAQVSIGKQW
201: KQFLDHSDSV GFIFHDDAKR LDRNAKNRYT V
001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
Arabidopsis Description
EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.