Factsheet for GSMUA_Achr3P02580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G527800.1	Wheat	cytosol, golgi	64.19	68.37
TraesCS3B01G591300.1	Wheat	cytosol	64.19	68.37
TraesCS3A01G521500.1	Wheat	cytosol	64.19	68.37
Zm00001d041682_P001	Maize	cytosol, extracellular	65.07	68.35
CDX90426	Canola	cytosol	27.07	67.39
Zm00001d041973_P001	Maize	cytosol	64.63	67.27
Bra012622.1-P	Field mustard	cytosol	38.43	67.18
HORVU3Hr1G113940.2	Barley	cytosol	62.45	66.51
EES02138	Sorghum	cytosol	63.76	66.36
Os01t0970400-01	Rice	cytosol	65.5	66.08
Solyc02g021550.2.1	Tomato	cytosol	53.28	65.95
CDY01513	Canola	extracellular	26.64	64.21
KRH21134	Soybean	cytosol	62.01	59.92
VIT_10s0003g02250.t01	Wine grape	cytosol	61.14	59.32
PGSC0003DMT400034911	Potato	cytosol	59.39	58.87
CDY61674	Canola	cytosol	56.77	57.02
GSMUA_Achr4P12820_001	Banana	cytosol	61.14	56.91
AT4G18040.1	Thale cress	cytosol	57.21	55.74
Bra013283.1-P	Field mustard	cytosol	55.46	55.7
CDX78824	Canola	cytosol	55.02	55.26
CDX76547	Canola	cytosol	55.9	54.7
CDY08883	Canola	cytosol	55.46	54.27
Bra021026.1-P	Field mustard	cytosol	55.02	53.85
KRH11115	Soybean	cytosol	54.15	52.99
GSMUA_Achr4P25000_001	Banana	cytosol	43.23	51.56
AT1G29590.1	Thale cress	cytosol	53.71	51.25
AT1G29550.1	Thale cress	cytosol	52.84	50.42
GSMUA_Achr5P12940_001	Banana	cytosol	45.85	50.24
CDX99836	Canola	cytosol	52.4	48.39
CDY44305	Canola	cytosol	51.09	47.95
CDX94676	Canola	cytosol	51.09	47.56
Bra030147.1-P	Field mustard	cytosol	50.66	47.54
Bra032325.1-P	Field mustard	cytosol	49.34	45.56
CDY48345	Canola	cytosol	48.47	44.76
GSMUA_Achr3P29580_001	Banana	cytosol	25.76	26.11
GSMUA_Achr4P11110_001	Banana	cytosol	24.45	24.78

Protein Annotations

MapMan:17.4.2.3.1	Gene3D:3.30.760.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G02580_001	EnsemblPlants:GSMUA_Achr3P02580_001	EnsemblPlants:GSMUA_Achr3T02580_001	InterPro:IPR023398	UniProt:M0SB76
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000295B0C4	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 4E-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02580_001]

Coordinates

chr3:+:1699038..1704694

Molecular Weight (calculated)

25919.0 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.644

Length

229 amino acids

Sequence
(BLAST)

001: MAEEAGMIAA ARASEEDKAR EREADPSDEI EEGEIEDADA DSDADAARRG GAQPHPLENS WTFWFDNPSA KSKQAAWGSS LRPIHTFATV EDFWSLYNNI
101: HHPSKLIMGA DFHCFKYKIE PKWEDPVCAN GGKWTISCVR GKADQLWLYT LLAMIGEQFE YGDEICGAVV SVRVKQERIA LWTKNAANEE AQTSIGRQWK
201: ELLDYNDTIG FIFHEDAKKD KVPKNRYTV

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.