Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38545 | Canola | cytosol | 89.95 | 90.4 |
| AT5G35620.1 | Thale cress | cytosol | 84.92 | 85.35 |
| CDX74645 | Canola | cytosol | 95.98 | 83.77 |
| CDY06456 | Canola | cytosol | 80.4 | 82.47 |
| CDY49364 | Canola | cytosol | 81.41 | 81.0 |
| CDX84118 | Canola | cytosol | 79.9 | 79.5 |
| Solyc09g090580.2.1 | Tomato | nucleus | 67.34 | 67.0 |
| VIT_05s0049g01770.t01 | Wine grape | cytosol | 66.83 | 65.2 |
| GSMUA_Achr4P25000_001 | Banana | cytosol | 62.81 | 65.1 |
| PGSC0003DMT400044186 | Potato | cytosol | 64.82 | 64.5 |
| Os10t0467600-01 | Rice | cytosol, plastid | 61.81 | 59.71 |
| Zm00001d032775_P002 | Maize | cytosol, extracellular | 62.81 | 59.52 |
| EER94108 | Sorghum | cytosol | 61.81 | 58.57 |
| KRG90357 | Soybean | endoplasmic reticulum | 58.79 | 58.5 |
| TraesCS1B01G167100.1 | Wheat | cytosol | 61.31 | 58.37 |
| KRH33614 | Soybean | cytosol | 59.3 | 57.56 |
| TraesCS1D01G146500.1 | Wheat | golgi | 60.3 | 57.42 |
| HORVU1Hr1G039260.2 | Barley | cytosol | 60.3 | 57.14 |
| GSMUA_Achr5P12940_001 | Banana | cytosol | 59.8 | 56.94 |
| TraesCS1A01G149200.1 | Wheat | cytosol | 60.3 | 56.34 |
| Zm00001d014065_P001 | Maize | cytosol, extracellular | 60.8 | 56.02 |
| CDX90426 | Canola | cytosol | 21.11 | 45.65 |
| CDY01513 | Canola | extracellular | 21.11 | 44.21 |
| CDY61674 | Canola | cytosol | 42.21 | 36.84 |
| CDX78824 | Canola | cytosol | 42.21 | 36.84 |
| CDX76547 | Canola | cytosol | 42.71 | 36.32 |
| CDY08883 | Canola | cytosol | 41.71 | 35.47 |
| CDX99836 | Canola | cytosol | 41.21 | 33.06 |
| CDY44305 | Canola | cytosol | 40.2 | 32.79 |
| CDX94676 | Canola | cytosol | 39.7 | 32.11 |
| CDY48345 | Canola | cytosol | 38.69 | 31.05 |
| CDY38487 | Canola | cytosol | 26.63 | 24.77 |
| CDX78777 | Canola | cytosol | 26.63 | 24.31 |
| CDX70795 | Canola | cytosol | 26.13 | 23.85 |
| CDY53257 | Canola | cytosol | 25.63 | 22.77 |
| CDY49143 | Canola | cytosol | 25.63 | 22.77 |
| CDY45630 | Canola | cytosol | 25.63 | 22.77 |
| CDY02645 | Canola | cytosol | 25.63 | 22.77 |
Protein Annotations
| MapMan:17.4.2.4.1 | Gene3D:3.30.760.10 | GO:A0A078H757 | UniProt:A0A078H757 | EnsemblPlants:CDY33686 | ProteinID:CDY33686 |
| ProteinID:CDY33686.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00055063001 | InterPro:IPR023398 | PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 |
| SUPFAM:SSF55418 | InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI0004EE96A3 | SEG:seg |
Description
BnaC04g29650DBnaC04g29650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H757]
Coordinates
chrLK032320:+:72825..75171
Molecular Weight (calculated)
22556.6 Da
IEP (calculated)
6.366
GRAVY (calculated)
-0.562
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEDVNEAL AAAEVPATET TEKQPAHKLE RKWSFWFDNQ SKPKQGAAWG ASLRKAYTFD TVQDFWGLHE TIFIPSKLTA NAEIHMFKAG VEPKWEDPEC
101: AHGGKWTYVV ANNRKPALDK AWLETLMALV GEQFDEADEI CGVVASARPK QDKLSLWTRT KSNEAVLMGI GKKWKEILDV TDKITFTNHD DSRRTRFTV
101: AHGGKWTYVV ANNRKPALDK AWLETLMALV GEQFDEADEI CGVVASARPK QDKLSLWTRT KSNEAVLMGI GKKWKEILDV TDKITFTNHD DSRRTRFTV
001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV
Arabidopsis Description
EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.