Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70606 | Canola | plastid | 90.96 | 89.11 |
| CDY70245 | Canola | plastid | 88.11 | 74.45 |
| CDY07408 | Canola | plastid | 86.05 | 72.71 |
| CDY61880 | Canola | plastid | 85.79 | 60.25 |
| Bra004059.1-P | Field mustard | plastid | 97.16 | 43.42 |
| CDY04196 | Canola | plastid | 90.96 | 39.6 |
| CDY16339 | Canola | plastid | 68.48 | 34.82 |
| CDY61036 | Canola | plastid | 79.07 | 34.42 |
| CDY07407 | Canola | cytosol, plastid | 87.34 | 30.81 |
| CDX91565 | Canola | plastid | 67.96 | 29.22 |
| CDX79416 | Canola | plastid | 65.63 | 28.1 |
| CDX67920 | Canola | plastid | 65.37 | 27.99 |
| AT3G45140.1 | Thale cress | plastid | 63.57 | 27.46 |
| VIT_13s0064g01490.t01 | Wine grape | cytosol | 24.03 | 23.31 |
| GSMUA_Achr9P12470_001 | Banana | plastid | 40.05 | 18.39 |
| KRH29669 | Soybean | plastid | 42.12 | 18.09 |
| GSMUA_Achr3P11780_001 | Banana | plastid | 38.5 | 17.61 |
| VIT_13s0064g01480.t01 | Wine grape | plastid | 40.83 | 17.5 |
| PGSC0003DMT400081909 | Potato | plastid | 40.31 | 17.35 |
| Solyc01g006540.2.1 | Tomato | plastid | 39.53 | 17.08 |
| Os08t0509100-01 | Rice | nucleus | 41.34 | 17.0 |
| Os08t0508800-01 | Rice | nucleus, plasma membrane | 40.57 | 16.99 |
| KRG89883 | Soybean | cytosol, plastid | 37.47 | 16.88 |
| KRG89889 | Soybean | cytosol, plastid | 36.69 | 16.51 |
| KRG89888 | Soybean | nucleus | 37.98 | 16.28 |
| Zm00001d053675_P001 | Maize | plastid | 37.73 | 16.13 |
| KXG29701 | Sorghum | plastid | 37.98 | 16.03 |
| Solyc01g006560.2.1 | Tomato | plastid | 37.21 | 15.96 |
| OQU80925 | Sorghum | cytosol | 35.66 | 15.95 |
| Zm00001d015852_P004 | Maize | plastid | 37.47 | 15.92 |
| Solyc12g011040.1.1 | Tomato | nucleus, plastid | 36.18 | 15.7 |
| Os02t0194700-01 | Rice | plasma membrane | 37.21 | 15.55 |
| KRH29668 | Soybean | nucleus | 36.18 | 15.45 |
| KRH24671 | Soybean | cytosol, plastid | 36.43 | 15.43 |
| KRH18682 | Soybean | cytosol, mitochondrion | 36.18 | 15.37 |
| HORVU6Hr1G033600.1 | Barley | plastid | 35.4 | 15.29 |
| KRH17965 | Soybean | plastid | 36.18 | 15.25 |
| TraesCS6B01G193400.1 | Wheat | plastid | 34.63 | 14.87 |
| TraesCS6A01G166000.1 | Wheat | golgi | 34.63 | 14.87 |
| TraesCS6D01G154600.1 | Wheat | plastid | 34.63 | 14.87 |
| TraesCS7A01G246200.1 | Wheat | plastid | 35.66 | 14.82 |
| TraesCS7D01G244800.1 | Wheat | plastid | 35.66 | 14.81 |
| Zm00001d031449_P001 | Maize | mitochondrion | 36.43 | 14.75 |
| TraesCS4D01G347300.1 | Wheat | cytosol | 33.59 | 14.69 |
| TraesCS7B01G145200.1 | Wheat | plastid | 35.14 | 14.66 |
| CDX82146 | Canola | plastid | 31.52 | 14.35 |
| CDX81825 | Canola | cytosol | 32.82 | 13.82 |
| CDY21750 | Canola | cytosol, mitochondrion, plastid | 32.56 | 13.71 |
| HORVU6Hr1G000510.1 | Barley | plastid | 32.82 | 13.63 |
| TraesCS5A01G007900.1 | Wheat | plastid | 32.56 | 13.58 |
| TraesCS5B01G006500.1 | Wheat | plastid | 32.56 | 13.58 |
| TraesCS5D01G013400.1 | Wheat | plastid | 32.56 | 13.58 |
| HORVU5Hr1G001180.1 | Barley | plastid | 32.3 | 13.43 |
| CDY64617 | Canola | cytosol | 31.78 | 13.38 |
| CDY49853 | Canola | plastid | 31.52 | 13.28 |
| CDX96769 | Canola | cytosol | 31.52 | 13.28 |
| CDY38326 | Canola | cytosol | 29.2 | 12.74 |
| CDY46325 | Canola | cytosol | 28.94 | 12.7 |
| CDY64191 | Canola | cytosol | 29.2 | 12.46 |
| CDY07417 | Canola | plastid | 29.46 | 12.42 |
| PGSC0003DMT400020118 | Potato | cytosol | 21.96 | 12.27 |
| TraesCS6D01G010100.1 | Wheat | plastid | 29.72 | 12.25 |
| HORVU7Hr1G006320.4 | Barley | plastid | 29.2 | 12.19 |
| HORVU7Hr1G050680.1 | Barley | peroxisome | 21.45 | 12.13 |
| TraesCS5D01G041100.1 | Wheat | plastid | 29.46 | 12.06 |
| Os12t0559200-01 | Rice | plastid | 28.17 | 11.82 |
| TraesCS5B01G033000.1 | Wheat | plastid | 28.68 | 11.68 |
| CDY12655 | Canola | plastid | 27.13 | 11.5 |
| TraesCS5A01G032800.1 | Wheat | mitochondrion | 25.32 | 11.41 |
| CDY51606 | Canola | plastid | 26.87 | 11.39 |
| CDY28879 | Canola | cytosol, endoplasmic reticulum, plastid | 28.94 | 10.0 |
| CDY43490 | Canola | cytosol, plasma membrane | 30.49 | 9.81 |
| CDY61881 | Canola | cytosol | 3.62 | 3.94 |
| TraesCS6B01G014400.1 | Wheat | cytosol | 2.84 | 1.83 |
| TraesCS7A01G034900.1 | Wheat | mitochondrion | 0.78 | 1.02 |
| CDY07409 | Canola | cytosol | 0.52 | 0.52 |
| HORVU3Hr1G047210.1 | Barley | cytosol | 0.26 | 0.46 |
| Solyc01g009680.2.1 | Tomato | plastid | 0.0 | 0.0 |
| Os12t0560200-00 | Rice | cytosol | 0.0 | 0.0 |
| TraesCS7D01G029400.1 | Wheat | cytosol | 0.0 | 0.0 |
| Os12t0559934-00 | Rice | cytosol | 0.0 | 0.0 |
| CDY72550 | Canola | cytosol | 0.0 | 0.0 |
| VIT_13s0064g01500.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| CDY70916 | Canola | cytosol | 0.0 | 0.0 |
| CDY70843 | Canola | cytosol | 0.0 | 0.0 |
| CDY61034 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.60.20 | Gene3D:4.10.372.10 | Gene3D:4.10.375.10 | MapMan:50.1.12 | GO:A0A078JBR8 | UniProt:A0A078JBR8 |
| EnsemblPlants:CDY61882 | ProteinID:CDY61882 | ProteinID:CDY61882.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0016702 | GO:GO:0046872 |
| GO:GO:0051213 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00034537001 | InterPro:IPR001024 | InterPro:IPR013819 | InterPro:IPR027433 |
| InterPro:LipOase | InterPro:LipOase_C | InterPro:LipOase_C_sf | InterPro:LipOase_plant | InterPro:Lipoxygenase_dom_3 | PFAM:PF00305 |
| PFAM:PF01477 | InterPro:PLAT/LH2_dom | InterPro:PLAT/LH2_dom_sf | PRINTS:PR00468 | PFscan:PS50095 | PFscan:PS51393 |
| PANTHER:PTHR11771 | PANTHER:PTHR11771:SF89 | SMART:SM00308 | SUPFAM:SSF48484 | SUPFAM:SSF49723 | UniPathway:UPA00382 |
| UniParc:UPI0004EE75E5 | : | : | : | : | : |
Description
BnaCnng38640DBnaCnng38640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBR8]
Coordinates
chrLK034055:+:35200..36742
Molecular Weight (calculated)
43384.9 Da
IEP (calculated)
5.404
GRAVY (calculated)
-0.401
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCKEASSSL QTLNIAKSLS SEFTKPSALV NPLSAGHRYK LFPRPIRGRC TVTASKFDID WITKDNVKKI KVKGIITAKQ GLLPSVGVTD LLGVSLLVEL
101: ISAETDPRTL MEKDPVKDNA RRVLLDAHGE DQYECVFDMP EDFGPVGAIR VLNQDLKEIF LKEMKLELPD GSVTFTFNSW VAPKSEDPTK RTFFSNKSYL
201: PLQTPEPLKQ LRKQELETLQ GKNRERAGEF EKFERVYDYD VYNDLGNPDK DPELARPILG GLSHPYPRRC KTGRKPCDKD PSAETRKALE FYVPRDEEFT
301: TVKGAQFTGT AVLSALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKDAGLFPVI PRLVKAAAEA NDILQFESPS LLDSTNF
101: ISAETDPRTL MEKDPVKDNA RRVLLDAHGE DQYECVFDMP EDFGPVGAIR VLNQDLKEIF LKEMKLELPD GSVTFTFNSW VAPKSEDPTK RTFFSNKSYL
201: PLQTPEPLKQ LRKQELETLQ GKNRERAGEF EKFERVYDYD VYNDLGNPDK DPELARPILG GLSHPYPRRC KTGRKPCDKD PSAETRKALE FYVPRDEEFT
301: TVKGAQFTGT AVLSALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKDAGLFPVI PRLVKAAAEA NDILQFESPS LLDSTNF
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.