Factsheet for GSMUA_Achr9P12470_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P29580_001
GSMUA_Achr4P11110_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	GSMUA_Achr3P29580_001	AT5G18110.1	11117257
AT3G45140.1	GSMUA_Achr4P11110_001	AT5G18110.1	11117257
AT3G45140.1	GSMUA_Achr4P25000_001	AT5G35620.1	11117257
AT3G45140.1	GSMUA_Achr5P12940_001	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g01490.t01	Wine grape	cytosol	30.84	65.16
GSMUA_Achr3P11780_001	Banana	plastid	63.94	63.71
OQU80925	Sorghum	cytosol	61.21	59.65
VIT_06s0004g01500.t01	Wine grape	cytosol	55.4	59.04
CDY61034	Canola	cytosol	31.08	58.61
HORVU7Hr1G050680.1	Barley	peroxisome	47.45	58.48
Solyc01g009680.2.1	Tomato	plastid	30.49	58.01
VIT_13s0064g01480.t01	Wine grape	plastid	61.92	57.81
PGSC0003DMT400020118	Potato	cytosol	47.09	57.29
VIT_06s0004g01480.t01	Wine grape	cytosol	53.5	56.87
VIT_13s0064g01500.t01	Wine grape	cytosol	16.73	56.4
TraesCS7A01G246200.1	Wheat	plastid	61.68	55.85
KRH29668	Soybean	nucleus	59.91	55.74
TraesCS7D01G244800.1	Wheat	plastid	61.57	55.69
TraesCS7B01G145200.1	Wheat	plastid	61.21	55.6
CDY07409	Canola	cytosol	25.5	55.56
Os08t0508800-01	Rice	nucleus, plasma membrane	60.74	55.41
Os08t0509100-01	Rice	nucleus	61.68	55.26
KRH24671	Soybean	cytosol, plastid	59.79	55.14
TraesCS4D01G347300.1	Wheat	cytosol	57.77	55.03
KRG89883	Soybean	cytosol, plastid	55.99	54.95
CDY72550	Canola	cytosol	20.88	54.83
VIT_06s0004g01460.t01	Wine grape	plastid	38.79	54.68
KRG89889	Soybean	cytosol, plastid	55.75	54.65
Zm00001d031449_P001	Maize	mitochondrion	61.8	54.5
KRH29669	Soybean	plastid	58.24	54.49
Solyc01g006560.2.1	Tomato	plastid	58.13	54.32
VIT_06s0004g01510.t01	Wine grape	plastid	58.01	54.27
PGSC0003DMT400081909	Potato	plastid	57.41	53.84
KRG89888	Soybean	nucleus	57.65	53.82
Solyc01g006540.2.1	Tomato	plastid	57.06	53.68
VIT_06s0004g01470.t01	Wine grape	cytosol	57.06	53.27
CDY16339	Canola	plastid	47.92	53.09
Solyc12g011040.1.1	Tomato	nucleus, plastid	54.8	51.79
KRH17965	Soybean	plastid	56.23	51.63
KRH18682	Soybean	cytosol, mitochondrion	55.75	51.59
CDY04196	Canola	plastid	54.33	51.52
Bra004057.1-P	Field mustard	cytosol	53.5	50.62
CDY61881	Canola	cytosol	21.12	50.14
Bra004059.1-P	Field mustard	plastid	51.48	50.12
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	51.01	50.06
Bra004060.1-P	Field mustard	plastid	53.02	49.72
AT3G45140.1	Thale cress	plastid	52.79	49.67
CDY61036	Canola	plastid	52.19	49.49
CDX91565	Canola	plastid	52.79	49.44
CDX79416	Canola	plastid	52.91	49.34
CDX67920	Canola	plastid	52.91	49.34
Bra003526.1-P	Field mustard	plastid	52.79	49.23
CDY61880	Canola	plastid	32.15	49.18
Bra022535.1-P	Field mustard	plastid	45.43	47.23
GSMUA_Achr6P28450_001	Banana	plastid	46.38	44.94
CDY07408	Canola	plastid	24.2	44.54
CDY70245	Canola	plastid	23.96	44.1
Bra004058.1-P	Field mustard	plastid	54.09	43.1
GSMUA_Achr8P22700_001	Banana	plastid	42.82	42.57
GSMUA_Achr9P16020_001	Banana	plastid	43.53	41.9
GSMUA_Achr3P07870_001	Banana	plastid	43.65	41.87
CDY07407	Canola	cytosol, plastid	54.21	41.66
CDY70606	Canola	plastid	19.1	40.76
CDY61882	Canola	plastid	18.39	40.05
GSMUA_Achr10P...	Banana	cytosol	41.52	39.77
GSMUA_Achr2P05850_001	Banana	cytosol	38.2	39.13
GSMUA_AchrUn_...	Banana	cytosol	39.62	39.06
GSMUA_Achr1P24370_001	Banana	cytosol	38.91	38.72
GSMUA_AchrUn_...	Banana	cytosol	35.94	38.65
GSMUA_Achr1P22970_001	Banana	cytosol	38.67	38.53
GSMUA_Achr6P25110_001	Banana	cytosol	35.82	38.04
GSMUA_Achr6P25090_001	Banana	cytosol	36.89	37.11
GSMUA_Achr9P19250_001	Banana	plasma membrane	41.16	36.49
GSMUA_Achr6P25080_001	Banana	cytosol	30.61	33.29
CDY70843	Canola	cytosol	4.51	30.16
GSMUA_Achr6P25100_001	Banana	cytosol	30.13	2.11

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G12470_001	EnsemblPlants:GSMUA_Achr9P12470_001
EnsemblPlants:GSMUA_Achr9T12470_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0TZQ6
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF65
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000296ABF8	SEG:seg	:

Description

Probable lipoxygenase 8, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G12470_001]

Coordinates

chr9:-:8132776..8137067

Molecular Weight (calculated)

95194.5 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.414

Length

843 amino acids

Sequence
(BLAST)

001: MLTPQLNRHA SSLLFCHGGS LPSGRGVPHG PAVMVRSKKT SKRSGVRSIR CALKEFRSSQ AETDAVLAIK AVATVKVTVG GLLSNLGLPR GIDDVKDLLG
101: KTLLLELVST ELDPKTGREK ETVKAYAKKA KQHGDEIEYE ASFKVPKDFG DIGGVFVVNE HRKEMFLEEI KLDASDHTAT ATTLTITCKS WVHSKSDNTD
201: KRLFFVNKSY LPAQTPAGLR RLREEELEVI RGDGQGERKA FERIYDYDLY NDLGDPDHDV SKTRPVLGGS KEFPYPRRCR TGRPRSKKDP ESETRSGFVY
301: VPRDEAFSEV KSATFSSRTL RSALRAAIPS IQTAVIDAKL GFPHFNAIDS LFGDGLTLPK RQGVGFFQGL LPRLVNAITG GTQELLLFDS PEMIERDKFS
401: WLRDEEFARQ TLAGVNPYAI ELIKEFPLVS KLDPEVYGPP ESAITEEMIE EEINGVMTVH EAIENKRLFM LDYHDLLLPY VHKVRELEGT TLYGSRTIFF
501: LTNDGTLRPL AIELTIPASA TGPQWKQVFR PRRDATGAWL WRHAKSHVRA HDSCHHELIS HWLRTHCCVE PYSIAAHRQL SEMHPIYRLL HPHFRYTMEI
601: NALARQALIN GGGIIEISFS PLKYSMEISS VAYDQLWRFD MEALPADLIR RGMAVEDPTA EHGLRLTVDD YPFANDGLLI WSAIKQWVED YVSHYYPDPS
701: HITDDYELQR WWDEVRTEGH GDKKDEPWWP KLNTLESLIH TLTTIIWVAS AHHAAVNFGQ YGFGGYFPNR PSIARTNMPT EDAQKENFRF NGRIREIEGI
801: IDSRNSDPKL KNRVGAGVVP YELMKPFSKP GITGMGIPNS VSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.