Factsheet for Bra004058.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002134.1-P
Bra006439.1-P
Bra023664.1-P
Bra035393.1-P
Bra035531.1-P
Bra039484.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Bra002134.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra006439.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra023664.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra035393.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra035531.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra039484.1-P	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07408	Canola	plastid	42.72	98.69
CDY07409	Canola	cytosol	35.73	97.67
Bra004057.1-P	Field mustard	cytosol	77.03	91.47
Bra004059.1-P	Field mustard	plastid	73.63	89.95
Bra004060.1-P	Field mustard	plastid	72.68	85.54
Bra003526.1-P	Field mustard	plastid	66.54	77.88
Bra022535.1-P	Field mustard	plastid	59.17	77.19
AT3G45140.1	Thale cress	plastid	62.85	74.22
Os12t0559934-00	Rice	cytosol	13.04	70.77
VIT_13s0064g01500.t01	Wine grape	cytosol	15.69	66.4
Solyc01g009680.2.1	Tomato	plastid	27.41	65.46
VIT_13s0064g01490.t01	Wine grape	cytosol	23.35	61.9
HORVU3Hr1G047210.1	Barley	cytosol	12.57	61.29
PGSC0003DMT400020118	Potato	cytosol	38.56	58.87
VIT_13s0064g01480.t01	Wine grape	plastid	48.3	56.59
KRH29669	Soybean	plastid	46.69	54.83
PGSC0003DMT400081909	Potato	plastid	46.12	54.28
Solyc01g006540.2.1	Tomato	plastid	45.84	54.13
GSMUA_Achr9P12470_001	Banana	plastid	43.1	54.09
Solyc01g006560.2.1	Tomato	plastid	46.03	53.99
GSMUA_Achr3P11780_001	Banana	plastid	42.63	53.31
KRH29668	Soybean	nucleus	45.09	52.65
KRH24671	Soybean	cytosol, plastid	45.27	52.41
Solyc12g011040.1.1	Tomato	nucleus, plastid	43.95	52.13
OQU80925	Sorghum	cytosol	42.25	51.68
KRG89883	Soybean	cytosol, plastid	41.78	51.46
Zm00001d053675_P001	Maize	plastid	43.86	51.27
KRG89889	Soybean	cytosol, plastid	41.49	51.05
Zm00001d015852_P004	Maize	plastid	43.29	50.27
Os02t0194700-01	Rice	plasma membrane	43.95	50.22
HORVU6Hr1G033600.1	Barley	plastid	42.16	49.78
KXG29701	Sorghum	plastid	43.1	49.73
KRG89888	Soybean	nucleus	42.44	49.72
HORVU7Hr1G050680.1	Barley	peroxisome	32.04	49.56
KRH17965	Soybean	plastid	42.91	49.46
TraesCS7D01G029400.1	Wheat	cytosol	12.38	49.43
TraesCS6D01G154600.1	Wheat	plastid	41.68	48.95
TraesCS6A01G166000.1	Wheat	golgi	41.68	48.95
TraesCS6B01G193400.1	Wheat	plastid	41.59	48.83
TraesCS4D01G347300.1	Wheat	cytosol	40.83	48.81
Os08t0508800-01	Rice	nucleus, plasma membrane	42.53	48.7
TraesCS7A01G034900.1	Wheat	mitochondrion	13.42	48.46
Os08t0509100-01	Rice	nucleus	43.01	48.35
KRH18682	Soybean	cytosol, mitochondrion	41.4	48.08
TraesCS6B01G014400.1	Wheat	cytosol	27.03	47.59
TraesCS7D01G244800.1	Wheat	plastid	41.59	47.21
TraesCS7B01G145200.1	Wheat	plastid	41.3	47.09
TraesCS7A01G246200.1	Wheat	plastid	41.4	47.05
Zm00001d031449_P001	Maize	mitochondrion	42.34	46.86
TraesCS5B01G006500.1	Wheat	plastid	39.51	45.04
TraesCS5A01G007900.1	Wheat	plastid	39.41	44.94
TraesCS5D01G013400.1	Wheat	plastid	39.41	44.94
HORVU5Hr1G001180.1	Barley	plastid	39.41	44.79
Os12t0559200-01	Rice	plastid	38.94	44.69
HORVU6Hr1G000510.1	Barley	plastid	39.04	44.31
HORVU7Hr1G006320.4	Barley	plastid	38.56	44.01
TraesCS5D01G041100.1	Wheat	plastid	38.28	42.86
TraesCS5B01G033000.1	Wheat	plastid	38.47	42.84
Bra021322.1-P	Field mustard	cytosol	34.69	42.82
Os12t0560200-00	Rice	cytosol	3.97	42.42
TraesCS6D01G010100.1	Wheat	plastid	37.52	42.28
Bra004081.1-P	Field mustard	plastid	36.2	41.72
Bra008037.1-P	Field mustard	plastid	36.2	41.68
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	36.11	41.57
Bra016602.1-P	Field mustard	cytosol	35.92	41.35
Bra033991.1-P	Field mustard	plastid	35.44	41.07
Bra039948.1-P	Field mustard	cytosol	32.89	39.23
TraesCS5A01G032800.1	Wheat	mitochondrion	31.29	38.53
Bra023829.1-P	Field mustard	cytosol	32.8	38.43

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EnsemblPlantsGene:Bra004058	EnsemblPlants:Bra004058.1	EnsemblPlants:Bra004058.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M4CIM4
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000254131E	SEG:seg	:

Description

AT3G45140 (E=0.0) LOX2, ATLOX2 | LOX2 (LIPOXYGENASE 2); lipoxygenase

Coordinates

chrA07:+:16584996..16591797

Molecular Weight (calculated)

120421.0 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.455

Length

1058 amino acids

Sequence
(BLAST)

0001: MFCKEASSSL QTLNIAKSLS SEFTKPSALI NPLSAGHRYK LCPRPNLRGR CTVTASKFDI DWIPKERVKK IKVKGIITAK QGLLPSVGVT DLLGVSLLVE
0101: LISAETDPRT LMEKDPVKDH ARRLVIDAHG EDQYECVFDM PEDFGAVGAI RVLNEAHREI FLKEMKIELP DGPVTFTCDS WVASKSEDPT KRTFFSNKSY
0201: LPLQTPEPLK QLRKEELETL QGKNRKRDGE FKKFERVYDY DVYNDVGDPE KDPELARPVM GGLSHPYPRR CKTGRKPSRK YPSIETRKGD FYVPRDEEWS
0301: TVKGTAFTGT TILAALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKNAGIFSLI PRLVKTVAEA DDILQFDSPI LLDTDRFSWI RDDEFARQTL
0401: AGLNPLCIEL VQEWPLKSKL DPAVYGDPNS LITSEIVERE IKGVMSFDEA LENKRLFMLD YHDLLLPYVN KVRELDDSTL YASRTLFFLN DDSTLRPVAI
0501: ELTRPQDKTR PQWRHLFTPG YDATSCWLWS LAKTHAITHG AGYHQLISHW LRTHCCMEPY IIAANRQLSA MHPIYRLLHP HFRYAMEINA RGRQSLVNAG
0601: GIIESCFWPG KYSLELSSDV YDKQWRFDRE GLPADLISRG LAVEDETAEY GVRLTIPDYP FANDGLMLWD ALKEWITDYV NHYYPDAEQV MLDEELQGWW
0701: SEVRNIGHGD KKNEPWWPDL KTQDDLIGVV TTIAWVASGH HAAVNFGQYG YGGYFPNRPT TSRIKMPVEE PTEEELKEFY KDPEKTMLKT FPSKKQATKL
0801: MLTLDLLSTH SPDEEYLGEN AEASWVHEPV IYAAYERFKG KLQYLEGVID ERNVDVALKN RAGAGVVNEV TNIGHGDKKN EPWWPVLKTQ DDLIEVVTTI
0901: AWVASGHHAA VNFGQYGYGG YFPNRPTTSR IKMPVEEPTE EELKEFYKDP EKTMLKTFPS KKQATKLMLT LDLLSTHSPD EEYLGENAEA SWVHEPVIYA
1001: AYERFKGKLQ YLEGVIDERN VDVALKNRAG AGVVKYELLK PISEPGLTGM GVPNSVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.