Factsheet for Os08t0508800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 15276429
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15276429 doi

MM Khan, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0262400-01
Os10t0467600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Os03t0262400-01	AT5G18110.1	11117257
AT3G45140.1	Os10t0467600-01	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0509100-01	Rice	nucleus	89.94	88.31
OQU80925	Sorghum	cytosol	70.89	75.72
TraesCS7A01G246200.1	Wheat	plastid	75.0	74.44
HORVU7Hr1G050680.1	Barley	peroxisome	54.65	73.83
TraesCS7D01G244800.1	Wheat	plastid	74.35	73.71
TraesCS7B01G145200.1	Wheat	plastid	73.81	73.49
TraesCS4D01G347300.1	Wheat	cytosol	67.75	70.73
Zm00001d031449_P001	Maize	mitochondrion	72.73	70.29
Os12t0559934-00	Rice	cytosol	14.39	68.21
VIT_13s0064g01500.t01	Wine grape	cytosol	17.53	64.8
Solyc01g009680.2.1	Tomato	plastid	29.22	60.95
VIT_13s0064g01490.t01	Wine grape	cytosol	26.3	60.9
CDY61034	Canola	cytosol	29.44	60.85
GSMUA_Achr9P12470_001	Banana	plastid	55.41	60.74
VIT_06s0004g01500.t01	Wine grape	cytosol	51.95	60.68
CDY07409	Canola	cytosol	25.32	60.47
VIT_06s0004g01480.t01	Wine grape	cytosol	51.19	59.65
CDY72550	Canola	cytosol	20.67	59.5
PGSC0003DMT400020118	Potato	cytosol	42.75	57.0
VIT_06s0004g01460.t01	Wine grape	plastid	36.8	56.86
VIT_13s0064g01480.t01	Wine grape	plastid	54.98	56.26
VIT_06s0004g01470.t01	Wine grape	cytosol	53.9	55.15
CDY61881	Canola	cytosol	21.1	54.93
KRH29669	Soybean	plastid	52.92	54.27
KRG89883	Soybean	cytosol, plastid	50.43	54.25
VIT_06s0004g01510.t01	Wine grape	plastid	52.49	53.83
KRH29668	Soybean	nucleus	52.6	53.64
KRG89889	Soybean	cytosol, plastid	49.89	53.6
Solyc01g006540.2.1	Tomato	plastid	51.52	53.12
Solyc01g006560.2.1	Tomato	plastid	51.84	53.1
PGSC0003DMT400081909	Potato	plastid	51.62	53.06
KRH24671	Soybean	cytosol, plastid	52.06	52.63
KRH17965	Soybean	plastid	52.06	52.4
CDY04196	Canola	plastid	50.32	52.31
KRG89888	Soybean	nucleus	50.65	51.83
CDX91565	Canola	plastid	50.32	51.67
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	47.94	51.57
CDY16339	Canola	plastid	42.21	51.25
Bra004060.1-P	Field mustard	plastid	49.68	51.06
CDY61036	Canola	plastid	49.03	50.96
Bra004057.1-P	Field mustard	cytosol	49.13	50.95
KRH18682	Soybean	cytosol, mitochondrion	50.22	50.93
Bra004059.1-P	Field mustard	plastid	47.73	50.92
CDX67920	Canola	plastid	49.78	50.88
Bra003526.1-P	Field mustard	plastid	49.57	50.66
Os02t0194700-01	Rice	plasma membrane	50.76	50.65
AT3G45140.1	Thale cress	plastid	49.03	50.56
CDX79416	Canola	plastid	49.46	50.55
Solyc12g011040.1.1	Tomato	nucleus, plastid	48.7	50.45
CDY70843	Canola	cytosol	6.82	50.0
Os03t0700400-00	Rice	cytosol, plasma membrane	6.82	50.0
Bra022535.1-P	Field mustard	plastid	43.51	49.57
Os04t0447100-01	Rice	cytosol	41.34	47.99
Os12t0559200-01	Rice	plastid	46.21	46.31
CDY61880	Canola	plastid	27.16	45.55
Bra004058.1-P	Field mustard	plastid	48.7	42.53
Os03t0179900-01	Rice	plastid	42.21	42.48
CDY70245	Canola	plastid	20.89	42.14
CDY07407	Canola	cytosol, plastid	49.78	41.93
CDY07408	Canola	plastid	20.24	40.83
CDY70606	Canola	plastid	17.42	40.76
Os03t0699700-01	Rice	cytosol, plastid	37.99	40.67
Os05t0304600-01	Rice	plastid	37.23	40.61
Os03t0738600-01	Rice	plasma membrane, plastid	38.2	40.57
CDY61882	Canola	plastid	16.99	40.57
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	38.42	40.48
Os12t0560200-00	Rice	cytosol	4.22	39.39
Os11t0575600-01	Rice	mitochondrion	36.69	39.06

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EntrezGene:4345993	EMBL:AF095895	ProteinID:BAD10665.1	ProteinID:BAF24113.1	ProteinID:BAT06178.1	ncoils:Coil
EMBL:D14000	ProteinID:EEE68970.1	EMBL:FJ607153	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006631	GO:GO:0006633	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009611	GO:GO:0009987
GO:GO:0016165	GO:GO:0016166	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0051707	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	EnsemblPlantsGene:Os08g0508800	EnsemblPlants:Os08t0508800-01	UniProt:P38419	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51257	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF66	UniProt:Q0J4K2
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000023B137	RefSeq:XP_015650717.1	SEG:seg

Description

lipoxygenase Lox2:Os:1, lipoxygenase 9, lipoxygenase 8, herbivore-induced type 2 13-lipoxygenase, RLL2 lipoxygenaseLipoxygenase, chloroplast precursor (EC 1.13.11.12). (Os08t0508800-01)

Coordinates

chr8:-:25216460..25224078

Molecular Weight (calculated)

102824.0 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.389

Length

924 amino acids

Sequence
(BLAST)

001: MLRPQLNPSS HTTTTSSSSS TQLFASSSCI ASLRRPSSSS SSVVAAARRT RGQGSSRVVV VCASSSATAS RGDSSSDMAA AAAVRVKAVA TIKVTVGELI
101: NRSIDIRDLI GRSLSLELVS SELDAKTGKE KATVRSYAHN VDDDDHSVVT YEADFDVPSG FGPIGAIIVT NELRQEMFLE DINLTASDGA GNSTVLPIRC
201: NSWVQPKSVG DEGTPSKRIF FANKTYLPGQ TPAGLRSYRK NDLQQKRGDG TGEREADDRV YDYDVYNDLG NPDSNGDLAR PVLGGNKQFP YPRRCRTGRP
301: PSKKDPKSET RKGNVYVPRD EEFSPEKEDY FLRKTVGSVL QAAVPAAQSL LLDKLKWNLP FPSFFVIDKL FEDGVELPGV DKLNFLESVV PRLLEHLRDT
401: PAEKILRFET PANIQKDKFA WLRDEEFARE TLAGINPYAI ELVREFPLKS KLDPAVYGPA ESAITADLLE EQMRRVMTVE EAISQKRLFM LDFHDLFLPY
501: VHKIRSLDHT TMYGSRTVFF LTDDGTLQLL AIELTRPASP SQPQWRQVFT PSTDATMSWL WRMAKAHVRA HDAGHHELIT HWLRTHCAVE PYIIAANRQL
601: SEMHPIYQLL RPHFRYTMRI NARARSALIS AGGIIERSFS PQKYSMELSS VAYDKLWRFD TEALPADLVR RGMAEEDPTA EHGLKLAIED YPFANDGLLI
701: WDAIKTWVQA YVARFYPDAD SVAGDEELQA FWTEVRTKGH GDKKDAPWWP KLDSPESLAH TLTTIVWVAA AHHAAVNFGQ YDFGGYFPNR PSIARTVMPV
801: EEPVDGAAME RFLDNPDQAL RECFPSQVQA TVVMAVLDVL SSHSTDEEYL GGEQTRPWNS DAAVQAAYDG FAARLKEIEG VIDGRNKDRK LKNRCGAGIL
901: PYQLMKPFSD SGVTGMGIPN STSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.