CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16339	Canola	plastid	82.33	97.37
CDY61034	Canola	cytosol	43.67	87.92
CDY07409	Canola	cytosol	37.44	87.08
CDY72550	Canola	cytosol	31.0	86.92
CDX67920	Canola	plastid	86.11	85.73
CDX79416	Canola	plastid	86.11	85.73
CDY70843	Canola	cytosol	11.89	84.92
CDY61881	Canola	cytosol	31.89	80.85
CDY04196	Canola	plastid	78.89	79.86
AT3G45140.1	Thale cress	plastid	78.56	78.91
CDY61036	Canola	plastid	77.44	78.4
CDY61880	Canola	plastid	46.11	75.32
CDY70245	Canola	plastid	36.56	71.83
Os12t0559934-00	Rice	cytosol	15.56	71.79
CDY07408	Canola	plastid	36.22	71.18
CDY70606	Canola	plastid	30.44	69.37
CDY61882	Canola	plastid	29.22	67.96
VIT_13s0064g01500.t01	Wine grape	cytosol	18.78	67.6
Solyc01g009680.2.1	Tomato	plastid	32.56	66.14
CDY07407	Canola	cytosol, plastid	79.78	65.45
HORVU3Hr1G047210.1	Barley	cytosol	15.0	62.21
VIT_13s0064g01490.t01	Wine grape	cytosol	26.89	60.65
PGSC0003DMT400020118	Potato	cytosol	46.22	60.03
VIT_13s0064g01480.t01	Wine grape	plastid	57.89	57.7
KRH29669	Soybean	plastid	55.67	55.6
Solyc01g006560.2.1	Tomato	plastid	55.67	55.54
PGSC0003DMT400081909	Potato	plastid	55.0	55.06
Solyc01g006540.2.1	Tomato	plastid	54.56	54.8
TraesCS7D01G029400.1	Wheat	cytosol	15.89	53.96
KRH29668	Soybean	nucleus	54.22	53.86
KRH24671	Soybean	cytosol, plastid	54.56	53.72
KRG89883	Soybean	cytosol, plastid	50.78	53.2
Solyc12g011040.1.1	Tomato	nucleus, plastid	52.67	53.14
GSMUA_Achr3P11780_001	Banana	plastid	49.78	52.96
GSMUA_Achr9P12470_001	Banana	plastid	49.44	52.79
OQU80925	Sorghum	cytosol	49.89	51.91
KRH17965	Soybean	plastid	52.78	51.74
KRG89889	Soybean	cytosol, plastid	49.33	51.63
Zm00001d053675_P001	Maize	plastid	51.89	51.6
Zm00001d015852_P004	Maize	plastid	52.11	51.48
KXG29701	Sorghum	plastid	51.67	50.71
KRG89888	Soybean	nucleus	50.67	50.5
Os08t0508800-01	Rice	nucleus, plasma membrane	51.67	50.32
TraesCS7A01G034900.1	Wheat	mitochondrion	16.33	50.17
HORVU7Hr1G050680.1	Barley	peroxisome	38.11	50.15
HORVU6Hr1G033600.1	Barley	plastid	49.89	50.11
Os02t0194700-01	Rice	plasma membrane	51.44	50.0
TraesCS6B01G014400.1	Wheat	cytosol	33.33	49.92
Os08t0509100-01	Rice	nucleus	52.11	49.84
KRH18682	Soybean	cytosol, mitochondrion	50.44	49.84
CDY70916	Canola	cytosol	27.78	49.6
TraesCS6A01G166000.1	Wheat	golgi	49.56	49.5
TraesCS4D01G347300.1	Wheat	cytosol	48.67	49.49
TraesCS6D01G154600.1	Wheat	plastid	49.44	49.39
TraesCS6B01G193400.1	Wheat	plastid	49.44	49.39
TraesCS7D01G244800.1	Wheat	plastid	49.78	48.07
TraesCS7B01G145200.1	Wheat	plastid	49.56	48.06
TraesCS7A01G246200.1	Wheat	plastid	49.67	48.01
Zm00001d031449_P001	Maize	mitochondrion	50.67	47.7
TraesCS5D01G013400.1	Wheat	plastid	48.11	46.66
TraesCS5A01G007900.1	Wheat	plastid	48.11	46.66
TraesCS5B01G006500.1	Wheat	plastid	48.11	46.66
HORVU5Hr1G001180.1	Barley	plastid	48.11	46.51
Os12t0560200-00	Rice	cytosol	5.11	46.46
Os12t0559200-01	Rice	plastid	46.67	45.55
HORVU7Hr1G006320.4	Barley	plastid	46.89	45.52
HORVU6Hr1G000510.1	Barley	plastid	46.56	44.96
TraesCS5D01G041100.1	Wheat	plastid	46.78	44.55
TraesCS5B01G033000.1	Wheat	plastid	47.0	44.53
TraesCS6D01G010100.1	Wheat	plastid	45.78	43.88
CDY21750	Canola	cytosol, mitochondrion, plastid	43.44	42.55
CDY64617	Canola	cytosol	43.44	42.55
CDY49853	Canola	plastid	43.44	42.55
CDX81825	Canola	cytosol	43.33	42.44
CDX96769	Canola	cytosol	43.22	42.33
CDY12655	Canola	plastid	42.78	42.17
CDX82146	Canola	plastid	39.56	41.88
CDY07417	Canola	plastid	42.67	41.83
CDY51606	Canola	plastid	42.22	41.62
TraesCS5A01G032800.1	Wheat	mitochondrion	37.89	39.7
CDY46325	Canola	cytosol	38.56	39.34
CDY38326	Canola	cytosol	38.56	39.12
CDY64191	Canola	cytosol	38.67	38.37
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	42.89	34.46
CDY43490	Canola	cytosol, plasma membrane	41.0	30.67

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078DQI1	EnsemblPlants:CDX91565	ProteinID:CDX91565	ProteinID:CDX91565.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00152962001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382	UniParc:UPI0004EDEE04	SEG:seg	:

Description

BnaC02g15950D

Coordinates

chrLK031868:-:453682..457175

Molecular Weight (calculated)

102912.0 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.436

Length

900 amino acids

Sequence
(BLAST)

001: MFCKESPSLQ TLSTAQSLSS LFPKPSALIN PILTGRRDNP CRRQNFRGRC KITASQSNIA QKGKLLKEKV KRIKVKGFIT AEEGLLESLS WSRPLDVITD
101: IRGRSLLVEL ISAETDTRTV MEEDPVEDYA QRVWFESRNE KYECVFDMPE DFGTVGAIRV QNQHHREMFI REMKLELPSG SVTFTCNSWV TPKSIDPTKR
201: IFFSNKSYLP SATPEPLKKL RKEELETLQG NNRERVGEFA KHERVYDYDV YNDVGDPEKD ERLARPVMGG LSYPYPRRCK TGRKPCEKDA SSEKREGEFY
301: VPRDEEFSTT KGTAFTGKAI LAALPSVFPQ IEAALLDPNL PFPHFKSIED LYQVGIDIPK DAGLLPMIPK LIKVVAEAQD NLLQFEPPIL LNKDRFSWIR
401: DDEFARQTLA GLNPYCIQLV TEWPLKSKLD PAVYGDPKSL ITWDIVEKEI RGVMSVDEGL KNKRLFMLDY HDLLLPSVNK VRELDDTTLY ASRTLFFLSD
501: DSTLRPVAIE LTRPPDVNRP QWSQVFTPGY DATSCWLWNL AKTHAVAHDA GYHQLISHWL RTHCCMEPYI IAANRQLSAM HPIYRLLHPH FRYTLEINAR
601: ARQSLVNAGG IIETCFWPGK YSLELSSDVY AKLWRFDREG LPADLISRGL AVEDETAEHG LRLTIPDYPF ANDGLMLWDA LKEWITEYVK HYYPDAALIM
701: CDEELQAWWS EVRNIGHGDK KDEPWWPVLR TQDDLIGVVT TIAWVASGHH AAVNFGQYGY GGYFPNRPTT TRIRMPVEEP TEEELKEFYE EPEKVLLKTF
801: PSQKQATQAM VTLDLLSTHS PDEEYLGEEP EASWVDDPVI FAAYERFKGR LKHLEEVIDE RNVNVSLKNR AGAGVVKYEL LKPISQPGVT GMGVPYSVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.