Factsheet for TraesCS5B01G006500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G013400.1	Wheat	plastid	98.71	98.71
TraesCS5A01G007900.1	Wheat	plastid	98.49	98.49
HORVU5Hr1G001180.1	Barley	plastid	94.07	93.77
Os12t0559934-00	Rice	cytosol	16.81	80.0
TraesCS6B01G014400.1	Wheat	cytosol	46.12	71.21
VIT_13s0064g01490.t01	Wine grape	cytosol	26.51	61.65
TraesCS5B01G033000.1	Wheat	plastid	62.72	61.26
Os12t0559200-01	Rice	plastid	60.45	60.85
Solyc01g009680.2.1	Tomato	plastid	28.99	60.72
CDY61034	Canola	cytosol	28.88	59.96
CDY07409	Canola	cytosol	23.92	57.36
Os12t0560200-00	Rice	cytosol	6.03	56.57
VIT_06s0004g01500.t01	Wine grape	cytosol	47.63	55.88
VIT_13s0064g01500.t01	Wine grape	cytosol	14.98	55.6
PGSC0003DMT400020118	Potato	cytosol	41.27	55.27
CDY72550	Canola	cytosol	19.07	55.14
VIT_06s0004g01480.t01	Wine grape	cytosol	46.98	54.98
VIT_06s0004g01460.t01	Wine grape	plastid	34.81	54.01
TraesCS6B01G193400.1	Wheat	plastid	51.4	52.94
VIT_13s0064g01480.t01	Wine grape	plastid	50.97	52.38
PGSC0003DMT400081909	Potato	plastid	49.89	51.5
VIT_06s0004g01510.t01	Wine grape	plastid	49.57	51.05
Solyc01g006560.2.1	Tomato	plastid	49.57	51.0
KRH29668	Soybean	nucleus	49.78	50.99
KRH24671	Soybean	cytosol, plastid	50.22	50.98
KRH29669	Soybean	plastid	49.46	50.94
VIT_06s0004g01470.t01	Wine grape	cytosol	49.46	50.83
Solyc01g006540.2.1	Tomato	plastid	49.03	50.78
CDY61881	Canola	cytosol	19.4	50.7
KRG89883	Soybean	cytosol, plastid	46.66	50.41
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	45.8	49.48
KRG89889	Soybean	cytosol, plastid	45.47	49.07
Solyc12g011040.1.1	Tomato	nucleus, plastid	46.66	48.54
KRG89888	Soybean	nucleus	46.98	48.28
CDX67920	Canola	plastid	46.98	48.23
CDX79416	Canola	plastid	46.88	48.12
Bra003526.1-P	Field mustard	plastid	46.88	48.12
CDX91565	Canola	plastid	46.66	48.11
KRH17965	Soybean	plastid	47.52	48.04
TraesCS7B01G145200.1	Wheat	plastid	47.84	47.84
CDY04196	Canola	plastid	45.8	47.81
AT3G45140.1	Thale cress	plastid	45.91	47.54
CDY16339	Canola	plastid	38.9	47.44
KRH18682	Soybean	cytosol, mitochondrion	46.55	47.42
Bra004057.1-P	Field mustard	cytosol	45.04	46.91
Bra004059.1-P	Field mustard	plastid	43.64	46.77
Bra004060.1-P	Field mustard	plastid	45.26	46.72
CDY61036	Canola	plastid	44.5	46.46
Bra022535.1-P	Field mustard	plastid	39.66	45.38
CDY70843	Canola	cytosol	6.14	45.24
CDY61880	Canola	plastid	24.89	41.92
TraesCS2B01G333600.1	Wheat	plastid	40.62	41.11
TraesCS4B01G295200.1	Wheat	plastid	40.41	40.63
TraesCS5B01G382600.1	Wheat	cytosol	36.75	39.61
Bra004058.1-P	Field mustard	plastid	45.04	39.51
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	36.64	39.49
TraesCS1B01G226400.1	Wheat	cytosol	35.88	39.45
TraesCS5B01G382400.1	Wheat	cytosol, golgi	36.1	39.14
TraesCS4B01G037700.3	Wheat	cytosol, golgi	36.21	39.02
TraesCS4B01G037800.1	Wheat	cytosol	36.75	38.84
TraesCS5B01G382300.1	Wheat	cytosol, unclear	35.99	38.66
TraesCS3B01G602500.1	Wheat	cytosol	36.64	38.59
CDY07407	Canola	cytosol, plastid	45.37	38.38
TraesCS3B01G605700.1	Wheat	cytosol	36.21	37.97
TraesCS6B01G160400.1	Wheat	mitochondrion	35.24	37.46
CDY70245	Canola	plastid	18.0	36.46
CDY07408	Canola	plastid	17.24	34.93
TraesCS6B01G395700.1	Wheat	cytosol	30.5	34.85
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	33.62	33.66
CDY70606	Canola	plastid	13.9	32.66
CDY61882	Canola	plastid	13.58	32.56

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5B01G006500
EnsemblPlants:TraesCS5B01G006500.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:7706162..7709863

Molecular Weight (calculated)

105463.0 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.545

Length

928 amino acids

Sequence
(BLAST)

001: MLTATKSLVG GACAAPSPAR RRTFVVPEAR RKPGNGRRTS VSKVGSTSTT TTTTTTLSTD SNGTAVGTVA RPDAHVRDRT QTTEMKATVT VHMSKAAGVR
101: DFLYDLILKT WLHVDLVSSE LDPQTGQEWE PISGAVKHSG RVDDEWDMYE ATFKVPGSFG PIGAVQVTNY HHSEMLLGDI EVFPTGQEES AVTFHCNSWI
201: DPSHCTPDKR VFFPARSYLP SQTPKGVEGL RKRELEILRG TGCGERKEHD RIYDYDVYND LGNPDDEKNP TTRPVLGGKE HPYPRRCRTG RPRSKKDPFS
301: EERSHKDHIY VPRDEAFTER KMGAFDTKKF MSQLHALTTG IKTAKHKDQS FPSLSAIDKL YDDNFRNQPV QPEGGKLRFV IDLLETELLH LFKLEGAAFL
401: EGIRRVFKFE TPEIHDRDKF AWFRDEEFAR QTIAGMNPLS IQLVTEFPIK SKLDEATYGS ADSLITKELI EEQIRRVMTA EEAVANKELF MLDYHDLLLP
501: YVLKVRKLEG TTLYGSRALF FLTDDGTLRP IAIELTRPKS KRKPQWRQVF TPGCDGSVTG SWLWQLAKAH VLAHDAGVHQ LVSHWLRTHA CTEPYIIAAN
601: RQLSQMHPIY RLLHPHFRFT MEINAQARAM LINADGIIEG SFAPGEYSIE LSSVAYDQQW RFDMEALPED LIRRGMAVRK ENGELELAIE DYPYANDGLL
701: IWDAIKEWAL TYVEHYYPCT ANIVDDEELQ AWWTEVRTKG HADKQDEPWW PELDSHENLA QALATIMWVT SAHHAAVNFG QYPMAGYIPN RPTMARRNMP
801: TEMGGDDMRA FVEAPEKVLL DTFPSQYQSA IVLAILDLLS THSSDEEYMG THEEPSWKQD GAIRQAFEKF KERTREIVEQ VDEWNNDPDR KNRHGAGMVP
901: YVLLRPSDGD PTDEKMVMEM GIPNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.