Factsheet for TraesCS6B01G395700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0699700-01	Rice	cytosol, plastid	69.21	65.12
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	63.67	60.05
TraesCS4B01G037700.3	Wheat	cytosol, golgi	63.42	59.81
TraesCS5B01G382300.1	Wheat	cytosol, unclear	61.7	57.99
TraesCS5B01G382400.1	Wheat	cytosol, golgi	59.61	56.54
TraesCS5B01G382600.1	Wheat	cytosol	59.73	56.33
KRH16725	Soybean	cytosol	14.78	51.95
VIT_06s0004g01580.t01	Wine grape	cytosol	20.94	50.75
TraesCS4B01G037800.1	Wheat	cytosol	54.43	50.34
TraesCS6B01G160400.1	Wheat	mitochondrion	53.94	50.17
CDY70916	Canola	cytosol	31.03	50.0
GSMUA_Achr1P22970_001	Banana	cytosol	51.72	49.65
VIT_14s0128g00780.t01	Wine grape	cytosol	52.22	49.36
KRH47069	Soybean	endoplasmic reticulum	27.46	49.01
VIT_14s0128g00790.t01	Wine grape	cytosol	52.34	48.91
KRH62403	Soybean	cytosol, endoplasmic reticulum	13.67	48.9
TraesCS3B01G605700.1	Wheat	cytosol	52.96	48.59
TraesCS3B01G602500.1	Wheat	cytosol	52.59	48.47
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	51.35	48.38
PGSC0003DMT400054145	Potato	cytosol	50.86	48.14
Bra021322.1-P	Field mustard	cytosol	50.49	47.84
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	50.37	47.56
KRH68548	Soybean	cytosol	50.12	47.44
PGSC0003DMT400028158	Potato	cytosol	50.25	47.33
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	50.12	47.27
AT1G55020.1	Thale cress	cytosol	49.75	47.03
KRG91271	Soybean	cytosol	49.38	46.74
PGSC0003DMT400063654	Potato	cytosol	28.2	46.64
KRH62399	Soybean	cytosol, endoplasmic reticulum	13.55	46.61
PGSC0003DMT400063477	Potato	cytosol	48.89	46.38
Solyc01g099200.2.1	Tomato	cytosol, plastid	47.91	46.25
Solyc01g099180.2.1	Tomato	cytosol	48.65	46.25
KRH35534	Soybean	cytosol	25.49	46.21
PGSC0003DMT400063446	Potato	cytosol	45.69	46.14
Solyc09g075860.2.1	Tomato	cytosol, nucleus	49.75	46.07
KRG88464	Soybean	cytosol	25.86	46.05
KRH33939	Soybean	cytosol, endoplasmic reticulum	49.01	46.01
PGSC0003DMT400081370	Potato	cytosol	49.63	45.95
PGSC0003DMT400063469	Potato	cytosol	47.66	45.91
VIT_05s0020g03170.t01	Wine grape	cytosol	49.51	45.89
Solyc01g099210.2.1	Tomato	cytosol	48.77	45.89
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	48.03	45.45
CDY38326	Canola	cytosol	49.63	45.43
Bra039948.1-P	Field mustard	cytosol	49.63	45.43
KRH44093	Soybean	endoplasmic reticulum	47.29	45.39
PGSC0003DMT400063461	Potato	cytosol	38.67	45.24
KRH13357	Soybean	endoplasmic reticulum	13.42	45.04
CDY46325	Canola	cytosol	48.89	45.01
KRH47522	Soybean	endoplasmic reticulum, nucleus	47.91	44.97
KRH10051	Soybean	endoplasmic reticulum, nucleus	47.29	44.86
AT3G22400.1	Thale cress	cytosol	48.89	44.81
KRH23269	Soybean	endoplasmic reticulum	45.2	44.65
KRH10050	Soybean	endoplasmic reticulum	47.04	44.57
KRH47525	Soybean	endoplasmic reticulum	47.54	44.47
KRH23266	Soybean	cytosol	45.2	44.43
KRH44090	Soybean	endoplasmic reticulum	47.04	44.42
Bra023829.1-P	Field mustard	cytosol	49.38	44.41
KRH44095	Soybean	endoplasmic reticulum	47.29	44.34
KRH10053	Soybean	endoplasmic reticulum	46.55	44.31
Solyc09g075870.1.1	Tomato	cytosol	46.55	44.26
KRH44097	Soybean	cytosol, endoplasmic reticulum	47.17	44.12
KRH47066	Soybean	endoplasmic reticulum, nucleus	46.67	44.12
CDY64191	Canola	cytosol	49.14	43.99
PGSC0003DMT400063452	Potato	cytosol	43.1	43.8
KRH57987	Soybean	cytosol	13.92	43.8
KRH23268	Soybean	endoplasmic reticulum	45.94	43.73
KRH44094	Soybean	endoplasmic reticulum	46.67	43.71
KRH23265	Soybean	endoplasmic reticulum, nucleus	46.55	43.65
KRH47067	Soybean	endoplasmic reticulum	46.18	43.4
KRH44092	Soybean	nucleus	42.36	40.14
KRH47064	Soybean	endoplasmic reticulum	27.46	39.12
TraesCS1B01G226400.1	Wheat	cytosol	40.02	38.51
CDY43490	Canola	cytosol, plasma membrane	50.37	34.0
Solyc01g099150.2.1	Tomato	nucleus	35.96	33.87
TraesCS4B01G295200.1	Wheat	plastid	38.3	33.69
TraesCS2B01G333600.1	Wheat	plastid	37.68	33.37
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	37.93	33.23
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	20.57	32.68
TraesCS7B01G145200.1	Wheat	plastid	36.33	31.79
TraesCS6B01G014400.1	Wheat	cytosol	23.15	31.28
TraesCS6B01G193400.1	Wheat	plastid	33.99	30.63
TraesCS5B01G006500.1	Wheat	plastid	34.85	30.5
TraesCS5B01G033000.1	Wheat	plastid	33.5	28.63

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468
ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF49	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS6B01G395700	EnsemblPlants:TraesCS6B01G395700.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:671221526..671230704

Molecular Weight (calculated)

90504.5 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.437

Length

812 amino acids

Sequence
(BLAST)

001: MDKLSGSGKK ARLKGSAVVL SRKVLDANDL TATVVDNIHE ILGNSITCQL VSATVTDPNN GGRGIVGSEA ALQQWLANLP SLTCTGECKF KVRFDWEVKK
101: QGVPGAIIVK NNHSTKFFLK TLTLDHVPGR GTIVFLANSW VYPTTKYHCN RVFFANDSYL PSEMPEGLRP YREDELRCLR GDDKQGPYQT HDRIYRYAVY
201: NDLGEPDRDG GGSARPVLGG SSEHPYPRRG RTGRSPSKKD PRSESRLTLL EQTYVPSDER FAHLKMADFA GYSLKAIVQG GGLKLPNIPA LNELRKSFPI
301: QLIKELLPVG GDYMLKLPKP DIIKENESAW RTDEEFAREI LAGVNPVSIT RLTEFPPKSS LDPSKYSDQT STITAHHIEK SLEGLSVQQA LDGKKLYILD
401: HHDHFMPFLL DINSLDGVHA YATRTLLFLR GDDTLKPLAI ELLAPARQPL LSVVHPLFKL LQPHYRDTMT INALARQTLI NAGGIFEQTV FMGKHSLAIS
501: SVVYKDWNFT DQALPDDLIK SSATSPLEEP TVTRTANCVP TLSGENTNPR NEAWPWRTRR SPARCGCCSR TTPYPTDGLA IWQAIEEWVT DYCAIYYKDE
601: KAVKGDEELQ AWWKEVREVG HSDLKDAAWW PAMQTVAELT KACATIVWIA SALHAAVNFG QYSYAGYVPN RPTVSRRAMP DPGSEEYAEL EREPERFFIR
701: TITSQLQTLL GISLLEILSK HSSDEIYLGQ RDTPTWTSDA EAVGAFGRLG ENLVRIESEV VGRNSDPLLK NRIGRPTSPT RCCTPTRRTT RARPPGSPPR
801: ASPTASPYDN TL

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.