Factsheet for TraesCS5B01G382400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G378800.2	Wheat	cytosol	87.97	96.79
TraesCS5B01G382600.1	Wheat	cytosol	92.52	91.99
TraesCS5B01G382300.1	Wheat	cytosol, unclear	83.18	82.41
Os03t0738600-01	Rice	plasma membrane, plastid	76.99	75.75
EES04025	Sorghum	cytosol	75.47	74.42
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	73.48	73.05
TraesCS4B01G037700.3	Wheat	cytosol, golgi	73.36	72.94
Zm00001d042541_P002	Maize	cytosol	74.88	72.51
EES04028	Sorghum	cytosol	73.01	71.59
Zm00001d042540_P008	Maize	cytosol	72.66	69.73
KRH35534	Soybean	cytosol	33.06	63.17
TraesCS4B01G037800.1	Wheat	cytosol	63.55	61.96
CDY70916	Canola	cytosol	35.51	60.32
TraesCS3B01G602500.1	Wheat	cytosol	61.92	60.16
PGSC0003DMT400063654	Potato	cytosol	34.23	59.67
TraesCS6B01G395700.1	Wheat	cytosol	56.54	59.61
GSMUA_Achr1P22970_001	Banana	cytosol	58.88	59.57
TraesCS6B01G160400.1	Wheat	mitochondrion	60.75	59.56
KRH16725	Soybean	cytosol	16.0	59.31
VIT_14s0128g00780.t01	Wine grape	cytosol	59.35	59.14
TraesCS3B01G605700.1	Wheat	cytosol	60.86	58.87
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.88	58.54
KRH62399	Soybean	cytosol, endoplasmic reticulum	16.0	58.05
PGSC0003DMT400028158	Potato	cytosol	58.41	58.0
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.18	57.77
VIT_14s0128g00790.t01	Wine grape	cytosol	58.64	57.77
KRH57987	Soybean	cytosol	17.41	57.75
PGSC0003DMT400054145	Potato	cytosol	57.71	57.58
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.24	56.98
KRH62403	Soybean	cytosol, endoplasmic reticulum	15.07	56.83
KRG91271	Soybean	cytosol	56.78	56.64
PGSC0003DMT400063446	Potato	cytosol	53.15	56.59
Bra021322.1-P	Field mustard	cytosol	56.31	56.24
Solyc01g099180.2.1	Tomato	cytosol	55.84	55.97
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.01	55.64
PGSC0003DMT400081370	Potato	cytosol	56.89	55.53
KRH68548	Soybean	cytosol	55.61	55.48
PGSC0003DMT400063461	Potato	cytosol	44.98	55.48
AT1G55020.1	Thale cress	cytosol	55.49	55.3
Solyc01g099200.2.1	Tomato	cytosol, plastid	54.32	55.29
PGSC0003DMT400063477	Potato	cytosol	55.14	55.14
KRH33939	Soybean	cytosol, endoplasmic reticulum	55.26	54.68
KRH10050	Soybean	endoplasmic reticulum	54.56	54.49
PGSC0003DMT400063469	Potato	cytosol	53.62	54.45
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	54.56	54.43
Solyc01g099210.2.1	Tomato	cytosol	54.79	54.35
VIT_05s0020g03170.t01	Wine grape	cytosol	55.61	54.34
KRH44095	Soybean	endoplasmic reticulum	54.44	53.81
PGSC0003DMT400063452	Potato	cytosol	50.12	53.69
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.09	53.46
KRH23266	Soybean	cytosol	51.52	53.39
Solyc09g075870.1.1	Tomato	cytosol	53.15	53.28
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.27	53.27
KRH44093	Soybean	endoplasmic reticulum	52.57	53.19
KRH44097	Soybean	cytosol, endoplasmic reticulum	53.86	53.11
KRH10053	Soybean	endoplasmic reticulum	52.92	53.11
Bra039948.1-P	Field mustard	cytosol	54.44	52.54
KRH23268	Soybean	endoplasmic reticulum	52.22	52.4
KRH44090	Soybean	endoplasmic reticulum	52.45	52.21
CDY38326	Canola	cytosol	54.09	52.2
CDY46325	Canola	cytosol	53.62	52.04
AT3G22400.1	Thale cress	cytosol	53.86	52.03
KRH44094	Soybean	endoplasmic reticulum	52.45	51.79
KRH47067	Soybean	endoplasmic reticulum	52.22	51.74
KRH13357	Soybean	endoplasmic reticulum	14.6	51.65
VIT_06s0004g01580.t01	Wine grape	cytosol	20.21	51.64
KRH23269	Soybean	endoplasmic reticulum	49.53	51.58
KRH47066	Soybean	endoplasmic reticulum, nucleus	51.64	51.46
KRH47522	Soybean	endoplasmic reticulum, nucleus	51.75	51.21
Bra023829.1-P	Field mustard	cytosol	53.74	50.94
CDY64191	Canola	cytosol	53.62	50.61
KRH47525	Soybean	endoplasmic reticulum	51.28	50.58
KRH47069	Soybean	endoplasmic reticulum	26.64	50.11
KRG88464	Soybean	cytosol	25.58	48.03
KRH44092	Soybean	nucleus	47.66	47.61
KRH47064	Soybean	endoplasmic reticulum	30.96	46.49
TraesCS1B01G226400.1	Wheat	cytosol	43.81	44.43
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	25.12	42.07
TraesCS6B01G014400.1	Wheat	cytosol	29.21	41.6
Solyc01g099150.2.1	Tomato	nucleus	41.24	40.95
CDY43490	Canola	cytosol, plasma membrane	56.31	40.07
TraesCS4B01G295200.1	Wheat	plastid	40.77	37.81
TraesCS2B01G333600.1	Wheat	plastid	40.42	37.73
TraesCS6B01G193400.1	Wheat	plastid	39.6	37.62
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	40.65	37.54
TraesCS7B01G145200.1	Wheat	plastid	39.6	36.53
TraesCS5B01G006500.1	Wheat	plastid	39.14	36.1
TraesCS5B01G033000.1	Wheat	plastid	37.97	34.21

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF54	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS5B01G382400
EnsemblPlants:TraesCS5B01G382400.1	TIGR:cd01751	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:560729231..560732457

Molecular Weight (calculated)

96331.0 Da

IEP (calculated)

5.890

GRAVY (calculated)

-0.262

Length

856 amino acids

Sequence
(BLAST)

001: MFSDIIGGLT GARLKGSVVL TRKNALDFND LGATIIDSVT EFLGRGVTCQ LISSTIVDSN NGNRGKVGAE ASLERWITSL PLITVGDSKF SVTFDWAVDK
101: LGVPGAIIVK NNHASEFFLK TITLDDVPGH GTVVFVANSW VYPQDMYRYN RVFFANDTYL PSKMPAALKP YRDDELRNLR GDDQQGPYEA HERVYRYDIY
201: HDLGDTRQIL GGSKEFPYPR RCRTGRKLSQ TNPDRESRLL PLVQNTYVPR DELFGHLKQS DFLGYSLKAL VDGIIPAIRT YVDLSPGEFD SFADILKLYE
301: GGIKLPNIPA LEEMRKRFPL ELVKDLIPMG GDYLLKLPKP QVIKEDEIAW MTDEEFAREI LAGVNPMMIT RVTEFPPKST LDPSQYGDHT STITEAHIRN
401: SLEGLTAQQA MASNRLYILD HHDNMMPYLV RLNNLDDTFL YATRTLFFLR GDGTLAPVAI ELSMPLLQGG LTTAKSTVYT PASTGVEAWI WQLAKAYVCV
501: NDYGYHQLVS HWLNTHAVME PFIIATNRQL SVTHPVHKLL QPHYRDTMNI NSRARELLIN AGGVIELTVF QRKYAMEMSS VTYKDWNFNE QALPDDLIKR
601: GMAVPDPSSP HKVRLLLEDY PYAVDGLAIW TVIEQWVTEY LAIYYTSDSV LQGDVELQAW WKEVREVGHG DLKDAAWWPE MKTLAELVKA CTTIIWTGSA
701: LHAAVNFGQY PYAGYHPNKP SASRRPMPEP GTEEYAMLAR EPEKVFIHTI TNQVQAIIGI SLLEILSKHS SDEIYLGQRD TPEWTSDAKA LEAFKRFGTR
801: LEGIESEVVA LNGNPQLKNR NGPVKFSYML LYPNTSDHNG DATGLTARGI PNSISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.