CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24671	Soybean	cytosol, plastid	94.15	93.33
Solyc01g009680.2.1	Tomato	plastid	35.1	71.78
Os12t0559934-00	Rice	cytosol	15.12	70.26
CDY72550	Canola	cytosol	23.84	67.29
PGSC0003DMT400020118	Potato	cytosol	51.43	67.24
CDY61034	Canola	cytosol	32.78	66.44
VIT_06s0004g01500.t01	Wine grape	cytosol	57.4	65.74
CDY07409	Canola	cytosol	27.81	65.12
VIT_06s0004g01480.t01	Wine grape	cytosol	56.84	64.94
HORVU3Hr1G047210.1	Barley	cytosol	15.45	64.52
VIT_06s0004g01510.t01	Wine grape	plastid	64.13	64.48
CDY70843	Canola	cytosol	8.94	64.29
KRH29669	Soybean	plastid	63.58	63.93
PGSC0003DMT400081909	Potato	plastid	62.36	62.85
Solyc01g006540.2.1	Tomato	plastid	61.7	62.39
VIT_06s0004g01460.t01	Wine grape	plastid	40.84	61.87
KRG89883	Soybean	cytosol, plastid	58.61	61.82
Solyc01g006560.2.1	Tomato	plastid	61.37	61.64
KRG89889	Soybean	cytosol, plastid	58.39	61.51
VIT_06s0004g01470.t01	Wine grape	cytosol	61.04	61.24
KRG89888	Soybean	nucleus	59.93	60.13
GSMUA_Achr9P12470_001	Banana	plastid	55.74	59.91
CDY61881	Canola	cytosol	23.4	59.72
KRH18682	Soybean	cytosol, mitochondrion	60.04	59.71
Solyc12g011040.1.1	Tomato	nucleus, plastid	58.61	59.53
KRH17965	Soybean	plastid	60.04	59.26
GSMUA_Achr3P11780_001	Banana	plastid	55.3	59.22
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	54.19	57.16
OQU80925	Sorghum	cytosol	54.19	56.76
HORVU6Hr1G033600.1	Barley	plastid	55.96	56.58
TraesCS6A01G166000.1	Wheat	golgi	55.85	56.16
TraesCS6B01G193400.1	Wheat	plastid	55.74	56.05
Zm00001d053675_P001	Maize	plastid	55.96	56.02
TraesCS6D01G154600.1	Wheat	plastid	55.63	55.94
KXG29701	Sorghum	plastid	56.29	55.62
Zm00001d015852_P004	Maize	plastid	55.63	55.32
TraesCS7D01G029400.1	Wheat	cytosol	16.0	54.72
Os02t0194700-01	Rice	plasma membrane	55.74	54.54
CDX91565	Canola	plastid	53.86	54.22
CDX67920	Canola	plastid	54.08	54.2
Bra003526.1-P	Field mustard	plastid	53.97	54.09
CDY04196	Canola	plastid	52.98	53.99
CDX79416	Canola	plastid	53.86	53.98
AT3G45140.1	Thale cress	plastid	53.31	53.91
Bra004057.1-P	Field mustard	cytosol	52.76	53.65
TraesCS6B01G014400.1	Wheat	cytosol	35.1	52.91
TraesCS7A01G246200.1	Wheat	plastid	54.3	52.85
Bra004060.1-P	Field mustard	plastid	52.43	52.84
Os08t0509100-01	Rice	nucleus	54.86	52.82
TraesCS7B01G145200.1	Wheat	plastid	54.08	52.8
TraesCS7D01G244800.1	Wheat	plastid	54.3	52.79
HORVU7Hr1G050680.1	Barley	peroxisome	39.85	52.78
TraesCS4D01G347300.1	Wheat	cytosol	51.55	52.77
Bra022535.1-P	Field mustard	plastid	47.13	52.65
CDY61036	Canola	plastid	51.66	52.64
Os08t0508800-01	Rice	nucleus, plasma membrane	53.64	52.6
Bra004059.1-P	Field mustard	plastid	50.22	52.54
Zm00001d031449_P001	Maize	mitochondrion	54.53	51.67
CDY16339	Canola	plastid	43.27	51.51
TraesCS7A01G034900.1	Wheat	mitochondrion	16.56	51.19
KRH35534	Soybean	cytosol	24.94	50.45
TraesCS5A01G007900.1	Wheat	plastid	50.99	49.78
TraesCS5B01G006500.1	Wheat	plastid	50.99	49.78
TraesCS5D01G013400.1	Wheat	plastid	50.99	49.78
HORVU5Hr1G001180.1	Barley	plastid	50.44	49.09
HORVU6Hr1G000510.1	Barley	plastid	50.0	48.61
TraesCS6D01G010100.1	Wheat	plastid	49.67	47.92
KRH42646	Soybean	plastid	48.12	47.34
HORVU7Hr1G006320.4	Barley	plastid	48.01	46.93
Os12t0559200-01	Rice	plastid	47.68	46.85
KRH06197	Soybean	nucleus	47.46	46.64
KRH47615	Soybean	nucleus	47.57	46.49
CDY61880	Canola	plastid	28.15	46.28
TraesCS5D01G041100.1	Wheat	plastid	47.68	45.71
TraesCS5B01G033000.1	Wheat	plastid	47.46	45.26
KRH69027	Soybean	plastid	44.92	45.17
KRH10882	Soybean	cytosol	21.63	45.16
Bra004058.1-P	Field mustard	plastid	52.65	45.09
KRG97300	Soybean	plastid	44.15	44.49
CDY07407	Canola	cytosol, plastid	53.64	44.3
KRH16725	Soybean	cytosol	11.26	44.16
Os12t0560200-00	Rice	cytosol	4.75	43.43
KRH33939	Soybean	cytosol, endoplasmic reticulum	41.39	43.35
KRH68548	Soybean	cytosol	40.84	43.12
KRH10050	Soybean	endoplasmic reticulum	40.73	43.06
KRH47522	Soybean	endoplasmic reticulum, nucleus	40.95	42.89
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.51	42.87
KRH44090	Soybean	endoplasmic reticulum	40.62	42.79
KRG91271	Soybean	cytosol	40.51	42.77
KRH44094	Soybean	endoplasmic reticulum	40.73	42.56
KRH10053	Soybean	endoplasmic reticulum	40.07	42.56
KRH23266	Soybean	cytosol	38.74	42.49
KRH44093	Soybean	endoplasmic reticulum	39.62	42.44
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.6	42.29
KRH44095	Soybean	endoplasmic reticulum	40.4	42.26
KRH23268	Soybean	endoplasmic reticulum	39.74	42.2
KRH47067	Soybean	endoplasmic reticulum	40.18	42.13
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.93	41.95
KRH47525	Soybean	endoplasmic reticulum	40.18	41.94
KRH57987	Soybean	cytosol	11.92	41.86
KRH23269	Soybean	endoplasmic reticulum	37.97	41.85
KRH47066	Soybean	endoplasmic reticulum, nucleus	39.62	41.79
KRH44092	Soybean	nucleus	39.51	41.77
CDY70245	Canola	plastid	21.08	41.7
KRH44097	Soybean	cytosol, endoplasmic reticulum	39.74	41.47
KRH23265	Soybean	endoplasmic reticulum, nucleus	39.62	41.45
KRH47069	Soybean	endoplasmic reticulum	20.75	41.32
CDY07408	Canola	plastid	20.86	41.27
KRH21441	Soybean	cytosol	41.17	40.99
KRH50048	Soybean	cytosol	41.06	40.88
TraesCS5A01G032800.1	Wheat	mitochondrion	38.19	40.28
KRH30640	Soybean	cytosol	8.28	40.11
KRH47064	Soybean	endoplasmic reticulum	24.72	39.3
KRH66214	Soybean	cytosol	36.64	38.34
KRH07345	Soybean	cytosol, plastid	36.2	38.1
KRH13357	Soybean	endoplasmic reticulum	10.15	38.02
CDY70606	Canola	plastid	16.34	37.47
CDY61882	Canola	plastid	15.45	36.18
KRG88464	Soybean	cytosol	16.89	33.55

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100786646	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02006813	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G130200	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	UniProt:I1LJS6	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
EnsemblPlants:KRH29668	ProteinID:KRH29668	ProteinID:KRH29668.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF65	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000233D130	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:9903923..9913136

Molecular Weight (calculated)

103811.0 Da

IEP (calculated)

7.384

GRAVY (calculated)

-0.460

Length

906 amino acids

Sequence
(BLAST)

001: MIKPQVYQSQ NTNQTLLFLQ RLSVHSSTAS LPLWLGSKVQ RQKKLNHLVL VSRNVETNST TTDTHTDKST VIKVKAIVKV KVTVGGFFSS LRLDRGIDDI
101: TDLLGKSLLL ELVSSELDPV TGLEKETLKA YAHKAGNGEE SVKYEAKFEV PNDFGEIGAV LVENEHHKEM FLETIHLDGF PEGPINFHCA SWVHSKFDNP
201: TKRVFFSDKC YLPRETPSGL RRLREEELSH LRGNGEGERK SFERIYDYDI YNDIGDPDKS LELQRPPLGG KERPYPRRCR TGRPHSEADP LSEKRSRNFY
301: VPRDECFSEV KQLTFSTKTL HSVLLILLPT LGKIIKEKEL AFSYFHDIDS LFSHGLDLPP EETEKGFLGK IMPRLVKSIS GDRTHVLRFE TPETMSRDRF
401: FWFRDEEFAR QTVAGLNPYS IRLVTEWPLR SKLDPEIYGP PESAITSEII NKEIGGIMSV EKAIEKKKLF MLDYHDILLP YVNKVRKLKG KTLYGSRTLF
501: FLNSEGTLRP LAIELTRPPS SSNNTGQWKQ VFTPSWHSTS VWLWRFAKAH VLAHDSGYHQ LVSHWLRTHC VTEPYVIATN RQLSELHPIY KLLHPHFRYT
601: MEINAIAREA LINADGTIES SFAPGKYSIE ISSAAYALEW RFDKQALPAD LVSRGMAVKD PFSPHGLKLT IQDYPFANDG LLLWDAIKLW VTDYVNHYYP
701: EPSLVESDEE LQAWWTEIRT LGHADKKDEP WWPRLKTPKD LIGILNTIIW VTSGHHAAVN FGQYVYGGYF PNRPTIVRTK MPSEDPTEEE WKKFIANPER
801: ALLKCFPSQL QATRVMAVLD ILSTHSPDEE YIGEKMEPSW GEDPVIKDAF ERFRERLKKL ETLIDERNEN TKLKNRNGAG IVPYELLKPF SKPGVTGMGV
901: PCSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.