Factsheet for TraesCS7A01G034900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g01500.t01	Wine grape	cytosol	48.12	56.4
Os12t0560200-00	Rice	cytosol	18.77	55.56
CDY70843	Canola	cytosol	19.11	44.44
CDY72550	Canola	cytosol	45.73	41.74
TraesCS4A01G275800.1	Wheat	cytosol	31.74	38.91
CDY07409	Canola	cytosol	45.73	34.63
CDY61881	Canola	cytosol	39.59	32.68
Solyc01g009680.2.1	Tomato	plastid	45.73	30.25
CDY61034	Canola	cytosol	44.71	29.31
VIT_06s0004g01460.t01	Wine grape	plastid	48.12	23.58
TraesCS5A01G007900.1	Wheat	plastid	70.99	22.41
TraesCS4A01G359800.1	Wheat	cytosol	39.59	21.85
Os12t0559200-01	Rice	plastid	62.8	19.96
TraesCS5A01G032800.1	Wheat	mitochondrion	57.68	19.67
VIT_06s0004g01480.t01	Wine grape	cytosol	53.24	19.67
VIT_06s0004g01500.t01	Wine grape	cytosol	52.9	19.6
PGSC0003DMT400020118	Potato	cytosol	45.73	19.34
TraesCS6A01G166000.1	Wheat	golgi	53.58	17.43
Bra022535.1-P	Field mustard	plastid	48.12	17.39
VIT_13s0064g01480.t01	Wine grape	plastid	53.24	17.28
VIT_06s0004g01510.t01	Wine grape	plastid	52.9	17.2
AT3G45140.1	Thale cress	plastid	52.22	17.08
KRG89883	Soybean	cytosol, plastid	49.83	17.0
KRH29669	Soybean	plastid	51.54	16.76
VIT_06s0004g01470.t01	Wine grape	cytosol	51.19	16.61
KRH29668	Soybean	nucleus	51.19	16.56
KRH24671	Soybean	cytosol, plastid	51.54	16.52
KRG89889	Soybean	cytosol, plastid	48.46	16.51
CDX79416	Canola	plastid	50.85	16.48
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	48.12	16.41
Bra003526.1-P	Field mustard	plastid	50.51	16.37
CDX67920	Canola	plastid	50.51	16.37
CDX91565	Canola	plastid	50.17	16.33
CDY04196	Canola	plastid	49.15	16.2
KRH17965	Soybean	plastid	50.17	16.01
Bra004057.1-P	Field mustard	cytosol	48.12	15.82
PGSC0003DMT400081909	Potato	plastid	48.46	15.8
TraesCS7A01G246200.1	Wheat	plastid	50.17	15.79
KRG89888	Soybean	nucleus	48.46	15.73
Solyc01g006560.2.1	Tomato	plastid	48.12	15.63
Solyc01g006540.2.1	Tomato	plastid	47.78	15.62
Bra004060.1-P	Field mustard	plastid	47.1	15.35
TraesCS5A01G379000.1	Wheat	nucleus, unclear	39.93	15.19
CDY61036	Canola	plastid	45.39	14.96
KRH18682	Soybean	cytosol, mitochondrion	46.08	14.82
Solyc12g011040.1.1	Tomato	nucleus, plastid	45.05	14.8
Bra004059.1-P	Field mustard	plastid	43.0	14.55
TraesCS5A01G378800.2	Wheat	cytosol	38.57	14.52
TraesCS4A01G275900.1	Wheat	cytosol, unclear	41.64	13.9
TraesCS6A01G132200.1	Wheat	mitochondrion	41.3	13.86
TraesCS6A01G132500.1	Wheat	mitochondrion	41.3	13.86
TraesCS5A01G378700.1	Wheat	cytosol	40.61	13.77
TraesCS5A01G378900.1	Wheat	cytosol	39.93	13.54
Bra004058.1-P	Field mustard	plastid	48.46	13.42
TraesCS1A01G212900.1	Wheat	cytosol	37.88	13.15
CDY07407	Canola	cytosol, plastid	47.78	12.76
TraesCS4A01G009400.1	Wheat	plastid	39.93	12.68
TraesCS2A01G315100.2	Wheat	plastid	38.91	12.13
TraesCS2A01G525500.1	Wheat	plastid	35.84	11.33
CDY16339	Canola	plastid	27.3	10.51
Os12t0559934-00	Rice	cytosol	2.73	4.1
CDY70606	Canola	plastid	2.73	2.03
CDY61880	Canola	plastid	3.07	1.63
CDY70245	Canola	plastid	2.39	1.53
CDY07408	Canola	plastid	2.05	1.31
CDY61882	Canola	plastid	1.02	0.78
VIT_13s0064g01490.t01	Wine grape	cytosol	1.02	0.75

Protein Annotations

EnsemblPlants:TraesCS7A01G034900.1	EnsemblPlantsGene:TraesCS7A01G034900	Gene3D:1.20.245.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR013819
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	PFAM:PF00305
PFscan:PS51393	SUPFAM:SSF48484	MapMan:50.1.12	:	:	:

Description

No Description!

Coordinates

chr7A:-:15523925..15524923

Molecular Weight (calculated)

33246.4 Da

IEP (calculated)

4.703

GRAVY (calculated)

-0.541

Length

293 amino acids

Sequence
(BLAST)

001: MESSRAPSRR QVLLGAQLSG LRQVLAVRQG GSPEDLIRRG MATKEEDGKL KLAIEDYPYA NDGLLVWDAI KEWASDYVEH YYPCMADIVD DEELQGWWTE
101: VRTKGHEDKK DGPWWPQLDS HESLVQVQAT IMWVTSAHHA AVNFGQYPFA GYFPNRPNIA RRNMPSEMGV EGMDAFEEAP EKVLLDTFPS MHESILVLAI
201: MNLLSSHSPD EEYMGTYQDP AWEENVKISK AFDKFKGGMM EIVAQINEWN KDRKRKNRHG AGVVPYVLLK PSDGDPMDEK MVTEMGIPNS ISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.