CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91565	Canola	plastid	97.37	82.33
Bra022535.1-P	Field mustard	plastid	87.39	82.0
CDY61880	Canola	plastid	54.93	75.86
CDY70245	Canola	plastid	43.36	72.05
CDY07408	Canola	plastid	43.23	71.83
Os12t0559934-00	Rice	cytosol	18.27	71.28
CDX79416	Canola	plastid	84.49	71.13
CDX67920	Canola	plastid	84.49	71.13
CDY70606	Canola	plastid	35.87	69.11
CDY61882	Canola	plastid	34.82	68.48
CDY04196	Canola	plastid	77.92	66.7
AT3G45140.1	Thale cress	plastid	77.92	66.18
CDY61036	Canola	plastid	76.61	65.58
HORVU3Hr1G047210.1	Barley	cytosol	17.87	62.67
VIT_13s0064g01490.t01	Wine grape	cytosol	32.19	61.4
CDY61034	Canola	cytosol	35.87	61.07
CDY07409	Canola	cytosol	28.65	56.33
CDY07407	Canola	cytosol, plastid	78.71	54.6
CDY61881	Canola	cytosol	24.44	52.39
CDY72550	Canola	cytosol	20.89	49.53
GSMUA_Achr9P12470_001	Banana	plastid	53.09	47.92
PGSC0003DMT400020118	Potato	cytosol	43.5	47.76
VIT_13s0064g01480.t01	Wine grape	plastid	56.5	47.62
GSMUA_Achr3P11780_001	Banana	plastid	52.3	47.04
Solyc01g009680.2.1	Tomato	plastid	27.2	46.73
KRH29669	Soybean	plastid	55.32	46.73
HORVU7Hr1G050680.1	Barley	peroxisome	41.52	46.2
Solyc01g006560.2.1	Tomato	plastid	54.4	45.9
PGSC0003DMT400081909	Potato	plastid	53.48	45.27
Solyc01g006540.2.1	Tomato	plastid	53.22	45.2
Solyc12g011040.1.1	Tomato	nucleus, plastid	51.64	44.06
KRG89883	Soybean	cytosol, plastid	49.67	44.0
KRH29668	Soybean	nucleus	51.51	43.27
KRH24671	Soybean	cytosol, plastid	51.77	43.11
KRH17965	Soybean	plastid	51.38	42.59
OQU80925	Sorghum	cytosol	48.23	42.43
KRG89889	Soybean	cytosol, plastid	47.83	42.33
Zm00001d053675_P001	Maize	plastid	50.2	42.21
Os08t0508800-01	Rice	nucleus, plasma membrane	51.25	42.21
KRG89888	Soybean	nucleus	49.67	41.86
Os08t0509100-01	Rice	nucleus	51.64	41.76
Zm00001d015852_P004	Maize	plastid	49.93	41.71
KXG29701	Sorghum	plastid	49.54	41.11
TraesCS4D01G347300.1	Wheat	cytosol	47.7	41.02
Os02t0194700-01	Rice	plasma membrane	49.8	40.93
KRH18682	Soybean	cytosol, mitochondrion	48.75	40.72
HORVU6Hr1G033600.1	Barley	plastid	47.83	40.62
TraesCS6A01G166000.1	Wheat	golgi	47.44	40.07
TraesCS7A01G246200.1	Wheat	plastid	48.88	39.96
TraesCS6D01G154600.1	Wheat	plastid	47.31	39.96
TraesCS6B01G193400.1	Wheat	plastid	47.31	39.96
TraesCS7D01G244800.1	Wheat	plastid	48.88	39.91
TraesCS7B01G145200.1	Wheat	plastid	48.62	39.87
TraesCS6B01G014400.1	Wheat	cytosol	31.41	39.77
Zm00001d031449_P001	Maize	mitochondrion	49.41	39.33
TraesCS5D01G013400.1	Wheat	plastid	47.44	38.9
TraesCS5B01G006500.1	Wheat	plastid	47.44	38.9
TraesCS5A01G007900.1	Wheat	plastid	47.44	38.9
HORVU5Hr1G001180.1	Barley	plastid	47.57	38.88
CDY70916	Canola	cytosol	25.23	38.1
Os12t0559200-01	Rice	plastid	45.99	37.96
HORVU6Hr1G000510.1	Barley	plastid	46.39	37.88
HORVU7Hr1G006320.4	Barley	plastid	45.6	37.43
TraesCS6D01G010100.1	Wheat	plastid	45.73	37.06
TraesCS5D01G041100.1	Wheat	plastid	45.73	36.83
TraesCS5B01G033000.1	Wheat	plastid	45.6	36.53
CDX81825	Canola	cytosol	43.23	35.8
CDY21750	Canola	cytosol, mitochondrion, plastid	43.1	35.69
CDY64617	Canola	cytosol	43.1	35.69
CDX96769	Canola	cytosol	42.97	35.58
CDY49853	Canola	plastid	42.84	35.47
CDY12655	Canola	plastid	42.44	35.38
CDY07417	Canola	plastid	42.31	35.08
CDY51606	Canola	plastid	42.05	35.05
CDX82146	Canola	plastid	38.24	34.24
TraesCS5A01G032800.1	Wheat	mitochondrion	37.71	33.41
CDY46325	Canola	cytosol	38.37	33.11
CDY38326	Canola	cytosol	38.11	32.69
CDY64191	Canola	cytosol	38.5	32.3
VIT_13s0064g01500.t01	Wine grape	cytosol	9.99	30.4
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	42.58	28.93
TraesCS7A01G034900.1	Wheat	mitochondrion	10.51	27.3
TraesCS7D01G029400.1	Wheat	cytosol	9.33	26.79
CDY43490	Canola	cytosol, plasma membrane	40.74	25.77
CDY70843	Canola	cytosol	0.0	0.0
Os12t0560200-00	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078FTS5	UniProt:A0A078FTS5	EnsemblPlants:CDY16339	ProteinID:CDY16339	ProteinID:CDY16339.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00090867001	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382
UniParc:UPI0004EE0FE0	SEG:seg	:	:	:	:

Description

BnaA02g11430DLipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A078FTS5]

Coordinates

chrLK032063:+:58584..61663

Molecular Weight (calculated)

87121.1 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.404

Length

761 amino acids

Sequence
(BLAST)

001: MFCKESPSLQ TLSTAQSLSS LFPKPSALIN PILTGRRDKP CRRQNFRGRC RITASQFNIA QKGKLLKEKV KRIKVKGFIT AEEGLLESLS WLRPLDVITD
101: IRGRSLLVEL ISAETDTRTV MEEGPVEDYA QRVWFESRNE KYECVFDMPE DFGTVGAIRV QNQHRREMFI KEMKLELPSG SVTFTCNSWV TPKSIDPTKR
201: IFFSNKSYLP SATPEPLKKL RKEELETLQG NNRERVGEFA KHERVYDYDV YNDVGDPEKD ERLARPVMGG LSHPYPRRCK TGRKPCEKDA SSEKREGEFY
301: VPRDEEFSST KGTAFTGKAI LAALPSVFPQ IEAALLDPNL PFPHFKSIED LFEVGIDIPK DTGLLPMIPK LIKVVAEAQD NLLQFDPPIL LNKDRFSWIR
401: DDEFARQTLA GLNPYCIQLV TEWPLKSKLD PAVYGDPKSL ITWDIVEKEI RGVMSVDEAL KNKRLFMLDY HDLLLPYVNK VRELDGTTLY ASRTLFFLSD
501: DSTLRPVAIE LTRPPDVNRP RWSQVFTPGY DATSCWLWNL AKTHAVAHDA GYHQLISHWL RTHCCMEPYI IAANRQLSAM HPIYRLLHPH FRYTLEINAR
601: ARQSLVNAGG IIETCFWPGK YSLELSSDVY AKLWRFDREG LPADLISRGL AVEDETAEHG LRLTIPDYPF ANDGLMLWDA LKEWITESVK HYYPDAALIT
701: CDDELQAWWS EVRNIGHGDK KDEPWWPVLR TQDDLIGVVT TIAWVASGHH AAVNFGQYGY G

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.