CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89883	Soybean	cytosol, plastid	69.26	73.46
KRG89889	Soybean	cytosol, plastid	68.94	73.02
KRH17965	Soybean	plastid	71.9	71.35
KRG89888	Soybean	nucleus	70.03	70.65
Solyc01g009680.2.1	Tomato	plastid	33.59	69.07
Os12t0559934-00	Rice	cytosol	14.05	65.64
VIT_06s0004g01500.t01	Wine grape	cytosol	55.43	63.84
PGSC0003DMT400020118	Potato	cytosol	48.52	63.78
VIT_06s0004g01480.t01	Wine grape	cytosol	55.21	63.43
HORVU3Hr1G047210.1	Barley	cytosol	14.93	62.67
CDY72550	Canola	cytosol	21.95	62.31
CDY61034	Canola	cytosol	30.41	61.97
KRH29668	Soybean	nucleus	59.71	60.04
CDY07409	Canola	cytosol	25.47	59.95
KRH24671	Soybean	cytosol, plastid	60.04	59.85
VIT_06s0004g01460.t01	Wine grape	plastid	39.08	59.53
KRH29669	Soybean	plastid	58.29	58.93
VIT_06s0004g01470.t01	Wine grape	cytosol	57.74	58.25
VIT_06s0004g01510.t01	Wine grape	plastid	57.41	58.05
Solyc01g006560.2.1	Tomato	plastid	57.41	57.98
Solyc01g006540.2.1	Tomato	plastid	56.53	57.48
CDY70843	Canola	cytosol	7.9	57.14
PGSC0003DMT400081909	Potato	plastid	56.31	57.06
Solyc12g011040.1.1	Tomato	nucleus, plastid	55.32	56.5
GSMUA_Achr9P12470_001	Banana	plastid	51.59	55.75
OQU80925	Sorghum	cytosol	51.59	54.34
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	51.15	54.25
CDY61881	Canola	cytosol	21.08	54.08
GSMUA_Achr3P11780_001	Banana	plastid	49.95	53.78
TraesCS4D01G347300.1	Wheat	cytosol	50.27	51.75
Zm00001d053675_P001	Maize	plastid	51.15	51.49
HORVU7Hr1G050680.1	Barley	peroxisome	38.64	51.46
KXG29701	Sorghum	plastid	51.15	50.82
TraesCS7B01G145200.1	Wheat	plastid	51.59	50.65
CDX91565	Canola	plastid	49.84	50.44
TraesCS7D01G244800.1	Wheat	plastid	51.59	50.43
CDY04196	Canola	plastid	49.18	50.39
TraesCS7A01G246200.1	Wheat	plastid	51.48	50.38
AT3G45140.1	Thale cress	plastid	49.51	50.33
HORVU6Hr1G033600.1	Barley	plastid	49.51	50.33
Os08t0508800-01	Rice	nucleus, plasma membrane	50.93	50.22
CDX67920	Canola	plastid	49.73	50.11
Zm00001d015852_P004	Maize	plastid	50.05	50.05
Os08t0509100-01	Rice	nucleus	51.7	50.05
Bra003526.1-P	Field mustard	plastid	49.62	50.0
Bra004059.1-P	Field mustard	plastid	47.42	49.88
Bra004057.1-P	Field mustard	cytosol	48.74	49.83
CDX79416	Canola	plastid	49.4	49.78
TraesCS6B01G014400.1	Wheat	cytosol	32.71	49.58
Zm00001d031449_P001	Maize	mitochondrion	52.03	49.58
TraesCS6B01G193400.1	Wheat	plastid	48.96	49.5
TraesCS6D01G154600.1	Wheat	plastid	48.96	49.5
Bra004060.1-P	Field mustard	plastid	48.85	49.5
CDY61036	Canola	plastid	48.19	49.38
Os02t0194700-01	Rice	plasma membrane	50.16	49.35
TraesCS6A01G166000.1	Wheat	golgi	48.74	49.28
Bra022535.1-P	Field mustard	plastid	43.8	49.2
TraesCS7D01G029400.1	Wheat	cytosol	14.27	49.06
KRH35534	Soybean	cytosol	24.04	48.88
CDY16339	Canola	plastid	40.72	48.75
TraesCS5D01G013400.1	Wheat	plastid	47.75	46.88
TraesCS5A01G007900.1	Wheat	plastid	47.53	46.66
TraesCS5B01G006500.1	Wheat	plastid	47.42	46.55
HORVU5Hr1G001180.1	Barley	plastid	47.2	46.19
TraesCS7A01G034900.1	Wheat	mitochondrion	14.82	46.08
HORVU7Hr1G006320.4	Barley	plastid	46.87	46.06
TraesCS6D01G010100.1	Wheat	plastid	47.31	45.9
Os12t0559200-01	Rice	plastid	45.55	45.01
HORVU6Hr1G000510.1	Barley	plastid	45.55	44.53
Os12t0560200-00	Rice	cytosol	4.83	44.44
KRH42646	Soybean	plastid	44.9	44.41
KRH06197	Soybean	nucleus	44.79	44.25
KRH47615	Soybean	nucleus	45.01	44.23
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.98	44.05
KRH10882	Soybean	cytosol	20.86	43.78
TraesCS5D01G041100.1	Wheat	plastid	45.33	43.7
KRH69027	Soybean	plastid	43.03	43.51
CDY61880	Canola	plastid	26.23	43.38
TraesCS5B01G033000.1	Wheat	plastid	45.12	43.26
KRH44093	Soybean	endoplasmic reticulum	40.18	43.26
KRH44090	Soybean	endoplasmic reticulum	40.29	42.67
KRH68548	Soybean	cytosol	40.18	42.66
KRG97300	Soybean	plastid	42.04	42.6
KRH44094	Soybean	endoplasmic reticulum	40.4	42.45
KRH16725	Soybean	cytosol	10.76	42.42
KRH10051	Soybean	endoplasmic reticulum, nucleus	39.85	42.41
KRH33939	Soybean	cytosol, endoplasmic reticulum	40.18	42.31
KRH10050	Soybean	endoplasmic reticulum	39.74	42.24
KRH47069	Soybean	endoplasmic reticulum	21.08	42.2
KRH47525	Soybean	endoplasmic reticulum	40.18	42.17
KRH23268	Soybean	endoplasmic reticulum	39.41	42.09
KRH10053	Soybean	endoplasmic reticulum	39.3	41.97
KRG91271	Soybean	cytosol	39.52	41.96
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.87	41.95
KRH47066	Soybean	endoplasmic reticulum, nucleus	39.41	41.79
KRH47067	Soybean	endoplasmic reticulum	39.63	41.78
KRH23266	Soybean	cytosol	37.87	41.77
KRH44095	Soybean	endoplasmic reticulum	39.63	41.69
KRH47522	Soybean	endoplasmic reticulum, nucleus	39.41	41.5
KRH57987	Soybean	cytosol	11.75	41.47
Bra004058.1-P	Field mustard	plastid	48.08	41.4
KRH23269	Soybean	endoplasmic reticulum	37.32	41.36
KRH44097	Soybean	cytosol, endoplasmic reticulum	39.3	41.24
KRH23265	Soybean	endoplasmic reticulum, nucleus	38.97	40.99
CDY07407	Canola	cytosol, plastid	49.29	40.93
KRH44092	Soybean	nucleus	38.09	40.49
KRH47064	Soybean	endoplasmic reticulum	25.03	40.0
KRH21441	Soybean	cytosol	39.74	39.78
KRH50048	Soybean	cytosol	39.52	39.56
TraesCS5A01G032800.1	Wheat	mitochondrion	37.21	39.46
CDY70245	Canola	plastid	19.76	39.3
KRH13357	Soybean	endoplasmic reticulum	10.43	39.26
CDY07408	Canola	plastid	19.32	38.43
CDY70606	Canola	plastid	16.03	36.96
KRH66214	Soybean	cytosol	34.58	36.37
KRH07345	Soybean	cytosol, plastid	34.36	36.35
CDY61882	Canola	plastid	15.37	36.18
KRH30640	Soybean	cytosol	7.14	34.76
KRG88464	Soybean	cytosol	16.68	33.33

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EMBL:ACUP02008118	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G075900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1LWA1	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH18682
ProteinID:KRH18682	ProteinID:KRH18682.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF65	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI000294B5F0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:17965755..17975800

Molecular Weight (calculated)

104828.0 Da

IEP (calculated)

7.350

GRAVY (calculated)

-0.378

Length

911 amino acids

Sequence
(BLAST)

001: MTLKNPYFHQ SFINNRASFS LREHKKYNWH SNDNGCFMNQ WKLPFLNTHQ RKKKACIVGC DTKCIKTMMV SSHGNTKTHK VKVIVAVKKC SGGGILSNFL
101: SECVDGIKQL IGNILVLELV SVDLDQKTNL EKKTIKGHAQ GVEKKERGVQ YECTFELPSD FGNVGAVLVQ HEHHKEMFLR SIVLHDVPYG PVHFTCNSWV
201: QPKHDCPVKR VFFSDKSYLP SQTPCGLRRL REVELMLLRG NGEGERKSYE RIYDYDVYND LGDPDFSIDL KRPILGCSEH PYPRRCRTGR EHSIADPLSE
301: RKCLNIFVPR DEAFAEIKQL QFTTTTISLG LSAILASLDT IFIDQNLGFA SFQDIDMLYK EGYHLPHPEP KWLTLLQKVI PSFIKVATDN KKTLHFDTPE
401: AVKRDRFFWF SDEEFARETL SGVNPYSIQL VKEWPLRSKL DPEIYGPPES AITREIIESQ IIGYRTVEEA IVEKKLFMLD YHDLFLPYVS KVREIKGTTL
501: YGSRTLFFLT KQGTLKPLAI ELTRPIMDGK PQWKQVFTPA SHSTDLWLWR LAKAHVLAHD SGYHELVNHW LRTHCALEPF IIATNRQLST MHPVYKLLHP
601: HMRYTMEINS LAREVLICAN GIIEISFSTN KYSMEISSVA YDQLWRFDLQ ALPNDLIHRG MALEDPNAPQ GLMLTIEDYP FANDGLLIWD AIKQWVTEYI
701: NHYYSNSSVV KSDQELQAWW TEIQKVGHGD KYKEPWWPSL ETPKDLIDII TTIAWIASGH HAAVNFAQYT YGGYFPNRPT IARIKMPTED PSKEEWENFL
801: KNPEQTLLEC LPSQIQATLV MVILNLLSNH SPDEEYIGQY MEPSWAENQT IKTSFERFNK RLKEIEGIID SRNGNYNLKN RCGAGLVPYE LMKPFSGPGI
901: TGKGVPYSAS I

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.