Factsheet for Zm00001d031449_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014065_P001
Zm00001d028515_P001
Zm00001d032775_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Zm00001d028515_P001	AT5G18110.1	11117257
AT3G45140.1	Zm00001d014065_P001	AT5G35620.1	11117257
AT3G45140.1	Zm00001d032775_P002	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80925	Sorghum	cytosol	83.26	92.02
TraesCS7A01G246200.1	Wheat	plastid	74.37	76.37
TraesCS7B01G145200.1	Wheat	plastid	73.64	75.86
TraesCS7D01G244800.1	Wheat	plastid	73.85	75.75
HORVU7Hr1G050680.1	Barley	peroxisome	53.35	74.56
TraesCS4D01G347300.1	Wheat	cytosol	68.51	74.01
Os08t0509100-01	Rice	nucleus	72.18	73.33
Os08t0508800-01	Rice	nucleus, plasma membrane	70.29	72.73
VIT_13s0064g01500.t01	Wine grape	cytosol	16.63	63.6
VIT_13s0064g01490.t01	Wine grape	cytosol	25.94	62.16
GSMUA_Achr9P12470_001	Banana	plastid	54.5	61.8
CDY61034	Canola	cytosol	28.45	60.85
CDY07409	Canola	cytosol	24.48	60.47
CDY72550	Canola	cytosol	20.29	60.44
Solyc01g009680.2.1	Tomato	plastid	27.82	60.05
VIT_06s0004g01500.t01	Wine grape	cytosol	49.27	59.54
VIT_06s0004g01480.t01	Wine grape	cytosol	48.01	57.88
PGSC0003DMT400020118	Potato	cytosol	41.0	56.57
VIT_06s0004g01460.t01	Wine grape	plastid	35.15	56.19
VIT_13s0064g01480.t01	Wine grape	plastid	52.93	56.04
CDY61881	Canola	cytosol	20.5	55.21
VIT_06s0004g01510.t01	Wine grape	plastid	51.57	54.72
KRG89889	Soybean	cytosol, plastid	49.16	54.65
Zm00001d053675_P001	Maize	plastid	51.67	54.59
KRH29668	Soybean	nucleus	51.67	54.53
VIT_06s0004g01470.t01	Wine grape	cytosol	51.36	54.37
KRH24671	Soybean	cytosol, plastid	51.88	54.27
KRG89883	Soybean	cytosol, plastid	48.74	54.25
KRH29669	Soybean	plastid	50.94	54.05
Zm00001d015852_P004	Maize	plastid	51.36	53.9
PGSC0003DMT400081909	Potato	plastid	50.21	53.39
Solyc01g006540.2.1	Tomato	plastid	49.48	52.79
Solyc01g006560.2.1	Tomato	plastid	49.69	52.66
KRG89888	Soybean	nucleus	49.58	52.49
KRH17965	Soybean	plastid	50.31	52.4
CDY70843	Canola	cytosol	6.9	52.38
KRH18682	Soybean	cytosol, mitochondrion	49.58	52.03
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.13	51.34
Solyc12g011040.1.1	Tomato	nucleus, plastid	47.28	50.67
CDX91565	Canola	plastid	47.7	50.67
CDY04196	Canola	plastid	46.86	50.39
CDX79416	Canola	plastid	47.07	49.78
AT3G45140.1	Thale cress	plastid	46.65	49.78
Bra004059.1-P	Field mustard	plastid	45.08	49.77
Bra004060.1-P	Field mustard	plastid	46.76	49.72
CDX67920	Canola	plastid	46.97	49.67
Bra004057.1-P	Field mustard	cytosol	46.23	49.61
Bra003526.1-P	Field mustard	plastid	46.86	49.56
CDY61036	Canola	plastid	46.03	49.49
CDY16339	Canola	plastid	39.33	49.41
Bra022535.1-P	Field mustard	plastid	41.21	48.58
CDY61880	Canola	plastid	25.42	44.1
Bra004058.1-P	Field mustard	plastid	46.86	42.34
Zm00001d025524_P001	Maize	plastid	40.38	41.55
Zm00001d003533_P001	Maize	plastid	40.8	41.45
Zm00001d033623_P003	Maize	cytosol	37.45	41.29
Zm00001d041204_P001	Maize	cytosol	36.61	41.18
CDY07407	Canola	cytosol, plastid	46.65	40.66
Zm00001d027893_P001	Maize	plastid	41.11	40.6
CDY07408	Canola	plastid	19.35	40.39
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	37.03	39.91
CDY70245	Canola	plastid	18.93	39.52
Zm00001d042540_P008	Maize	cytosol	36.82	39.46
Zm00001d033624_P001	Maize	cytosol	36.61	39.46
Zm00001d042541_P002	Maize	cytosol	36.4	39.37
CDY70606	Canola	plastid	15.79	38.23
CDY61882	Canola	plastid	14.75	36.43
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	31.8	33.63

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:103642039	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	UniProt:A0A1D6KIW6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	ProteinID:ONM02899.1	PFAM:PF00305
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF66	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI0004DE9CDC	EnsemblPlantsGene:Zm00001d031449	EnsemblPlants:Zm00001d031449_P001	EnsemblPlants:Zm00001d031449_T001	SEG:seg

Description

lipoxygenase13Lipoxygenase 2 chloroplastic

Coordinates

chr1:+:190316537..190321646

Molecular Weight (calculated)

105338.0 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.328

Length

956 amino acids

Sequence
(BLAST)

001: MHLQLKPFRN AARSRCSRAA PARGPAAGLL FFPVAVAAAS SSSPSSSLSS RPSSSLVQLR RWSRRKTIGC VASSSSARSE TPSSSSGASA AAASTSAMAE
101: ARVTAVATIK VTAGGFLNSL RPSRAIDDIK DLIGRSLYLE LVSSHLDAKT GREKPTLRSY AHKVADNDAD VVTYEADFDL PPGFGEVGAV LVTNEHHTEM
201: FLEDVSLYTN SDSGSDSDSD SGSDDARAAP LLAIRCRSWV EPKSSDAAGD GKRVFFANKP YLPGQTPPGL RSYRSKDLEE KRGDGRGERK PSDRIYDYAT
301: YNDLGDPDSD AAKARPVLGG SAQFPYPRRC RTGRPMSAKD PSTETRSGDN YVPRDEAFSE VKNLQFSVTT LRSVLHAAVP AVQSTLIDPN LAFPSFFVID
401: KLFEDGVELP KADQLGFLRS VVPRLLQLLR DGPGDQVLLF DRPANVQKDK FAWLRDEEFA RETLAGMNPY AIELVREFPL KSKLDPAVYG QAESAITAEV
501: LERQMGRVMT VAEAVSQKRL FMLDYHDLFL PYVHRIRAQA HTTMYGSRTI FFLCNDGTLR LLAIELTRPA SPTQPQWRRV FTSSTDTTES WLWRMAKSHV
601: RAHDSGHHEL ISHWLRTHCA VEPYIIAANR QLSEMHPVYQ LLHPHFRYTM RINALARSAL INAGGIIELS FSPQRYAIEL SSVAYDKLWR FDTEALPADL
701: VRRGMAVEDP AAEHGLRLTI PDYPFANDGL LVWDAIKGWV TAYVARFYPD ASTLAGDAEL QAFWTDVRTV GHGDKKDAPG WPALDSPDSL AHALTTIIWV
801: ASAHHAAVNF GQYDFAGYFP NRPSIARTNM PVEEPVDATA LAAFLDNPDQ ALRECFPSQV QATLVMAVLD LLSTHSPDEE YLGGMETAPW NDDATVQDAY
901: GKFNARLKEI EGIMDERNKD RRLKNRCGAG ILPYQLMKPF SQPGVTGMGI PNSTSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.