Factsheet for Zm00001d002000_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27309	Sorghum	mitochondrion, plastid	87.17	86.88
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	63.05	62.5
HORVU2Hr1G115980.2	Barley	plastid	60.95	62.47
HORVU2Hr1G115960.1	Barley	plastid	61.5	60.11
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	61.5	59.98
TraesCS2A01G525500.1	Wheat	plastid	60.84	59.33
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	60.73	59.22
Zm00001d033623_P003	Maize	cytosol	40.15	41.87
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	40.93	41.71
Zm00001d033624_P001	Maize	cytosol	40.71	41.49
Zm00001d042541_P002	Maize	cytosol	39.93	40.84
Zm00001d042540_P008	Maize	cytosol	40.15	40.7
Zm00001d041204_P001	Maize	cytosol	36.39	38.71
Zm00001d053675_P001	Maize	plastid	34.96	34.92
Zm00001d015852_P004	Maize	plastid	34.4	34.14
Zm00001d003533_P001	Maize	plastid	35.4	34.01
Zm00001d025524_P001	Maize	plastid	34.85	33.91
Zm00001d027893_P001	Maize	plastid	34.29	32.02
Zm00001d031449_P001	Maize	mitochondrion	33.63	31.8
KRH30640	Soybean	cytosol	5.97	28.88

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100037805	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	MapMan:50.1.12
UniProt:A0A1D6DVH5	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant
ProteinID:ONM12737.1	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF91	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000844D49A	EnsemblPlantsGene:Zm00001d002000	EnsemblPlants:Zm00001d002000_P003	EnsemblPlants:Zm00001d002000_T003
SEG:seg	:	:	:	:	:

Description

lipoxygenase6 lipoxygenase6

Coordinates

chr2:+:4150293..4154404

Molecular Weight (calculated)

98668.0 Da

IEP (calculated)

6.004

GRAVY (calculated)

-0.287

Length

904 amino acids

Sequence
(BLAST)

001: MMQQLRHSQP SPCLCGLRAA RPMLALGAAA SRSRPAGKLQ PSVCLGLGHV APAAARGQPR PRAVADSALG ASPTSVHVGG KLLLQNFAAD SQQRLKLSIQ
101: LVSATVADPD GRGVKAEASV LDAVVGSGDS ELDVDLIWDE ALGAPGAVVV KNHSDFPVYL RLLSVPAGVG GADDEAAAVH FACNGWVYPV DKHPYRLFFT
201: NDACVKEETP SALLKYREDE LGALRGDGET TERPFQPWDR VYDYALYNDL GNPDLRQDLA RPVLGGSQEY PYPRRTKTGR PAAKTGPCPF TISVSQKHPR
301: SESRAPLDEE IYVPCDERVG FASIPAPTLP PLGGHFRSLA DVYRLFGLDD LGRLPEAKAV INSGAPFPVV PQVISVNPTH WRKDEEFARQ MIAGANPVCI
401: KRVTKFPLAS ELDRGVFGDQ DSKITKDHVE KNMGGMTVQQ AVEEGRLYVV DHHDWVMPYL KRINELPASE EKAEVSQRKV YAARTLLFLD GEDSSMLRPL
501: AIELSSPHPE KEQLGAVSTV YTPPDSGDDG ITAGRFSTWE LAKVYASAND AAENNFVTHW LNTHASMEPI VIAANRQLSV LHPIHRLLKP HFRKTLHINA
601: VARQIIVGSG DQRKDGSVFR GIDEVTYFPS KYNMEMSSKA YKAWNFTDLA LPNDLIKRGL AKGDPKKPET VELAIKDYPY AVDGLDMWAA IKKWVADYCA
701: IYYADDGAVA RDSELQGWWS EVRNVGHGDL ADAPWWPAMD CVADLVETCA TVVWLSSAYH ASISFGQYDY LGFVPNGPSI TTRPVPGPDA GAEVTESDFL
801: ASVTPVTEAL GFMSIASGPM GLKGTEVYLG QRPDTEQWTR ERRAAEALAE FRARLEEVAG NIDRRNADPA LKNRTGQVEV PYTLLKPTAQ PGLVLRGIPN
901: SITV

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.