Factsheet for Zm00001d025524_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G17420.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10882	Sorghum	plastid	89.99	90.48
Os04t0447100-01	Rice	cytosol	75.78	88.44
Zm00001d003533_P001	Maize	plastid	89.45	88.31
TraesCS2D01G313400.1	Wheat	plastid	82.24	83.96
TraesCS2B01G333600.1	Wheat	plastid	81.92	82.99
TraesCS2A01G315100.2	Wheat	plastid	82.02	81.06
GSMUA_Achr3P07870_001	Banana	plastid	65.98	69.74
GSMUA_Achr8P22700_001	Banana	plastid	63.29	69.34
GSMUA_Achr9P16020_001	Banana	plastid	65.34	69.29
VIT_00s0265g00170.t01	Wine grape	cytosol	36.28	66.73
CDY21750	Canola	cytosol, mitochondrion, plastid	58.56	59.19
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	58.56	59.19
Zm00001d027893_P001	Maize	plastid	61.57	59.09
CDX81825	Canola	cytosol	58.34	58.98
AT1G17420.1	Thale cress	cytosol, plastid	58.23	58.87
CDY64617	Canola	cytosol	58.02	58.65
Bra016602.1-P	Field mustard	cytosol	58.02	58.65
CDX96769	Canola	cytosol	57.91	58.54
Solyc03g122340.2.1	Tomato	cytosol	57.16	58.48
PGSC0003DMT400058933	Potato	plastid	57.05	57.99
VIT_09s0002g01080.t01	Wine grape	cytosol	57.7	57.82
AT1G72520.1	Thale cress	plastid	57.59	57.78
KRG97300	Soybean	plastid	55.76	57.62
KRH69027	Soybean	plastid	55.54	57.27
CDX82146	Canola	plastid	52.31	57.18
KRH06197	Soybean	nucleus	56.73	57.16
KRH47615	Soybean	nucleus	56.94	57.07
CDY49853	Canola	plastid	56.4	57.02
Bra008037.1-P	Field mustard	plastid	56.4	57.02
KRH10882	Soybean	cytosol	23.68	50.69
KRH50048	Soybean	cytosol	47.9	48.9
KRH21441	Soybean	cytosol	46.39	47.36
Zm00001d033623_P003	Maize	cytosol	39.18	41.98
Zm00001d015852_P004	Maize	plastid	40.58	41.38
Zm00001d041204_P001	Maize	cytosol	37.67	41.18
Zm00001d053675_P001	Maize	plastid	39.94	40.99
Zm00001d031449_P001	Maize	mitochondrion	41.55	40.38
Zm00001d042541_P002	Maize	cytosol	38.11	40.05
Zm00001d033624_P001	Maize	cytosol	38.21	40.02
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	38.0	39.8
Zm00001d042540_P008	Maize	cytosol	38.11	39.69
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	33.91	34.85

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:A0A1D6J7K0	ProteinID:AQK43899.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000844D2C7	EnsemblPlantsGene:Zm00001d025524	EnsemblPlants:Zm00001d025524_P001	EnsemblPlants:Zm00001d025524_T001	SEG:seg

Description

lipoxygenase7 lipoxygenase7

Coordinates

chr10:+:121268606..121272616

Molecular Weight (calculated)

103609.0 Da

IEP (calculated)

7.143

GRAVY (calculated)

-0.420

Length

929 amino acids

Sequence
(BLAST)

001: MELLGRSFAP GHAAAAPRRG GGPCFAAVGR EGSGAHRRRS SSSSSLRSTA PVDALAERVV APPERAEAVP PEPSVAARAV VTVRRSRKRD AKCRVAERLD
101: ACADWVGRSV LLELISTETD PRKGGPKKSR RSALVGWFGE KDVKAERVVY TADFNVDGSF GEPGAVAVLN RHQREFFVES IVVEGFPSGP AHFTCYSWVQ
201: PTRVHRDPRV FFTNKPYLPA QTPPGLRELR RLELSDLRGE GAGTGGERRT TDRVWEYDVY NDLGNPDMGA EFARPILGGD QQLPYPRRMR TGRPKTFTGK
301: PPLLPPPPPP PPPAHYDRAE SRVEYPEPIY VSRDEEFEEG KNEMLSEGAL KALLHNFMPL LVSSVSPDFR DFAGFHDVDN LFKEGLRLKQ ALQDQLFQKI
401: PFVRKVQENS EGLLRYDTPD IIKRDKFAWL RDDEFARQAL AGINPVNIER LQAFPPMSKL DPAVYGPPES AITEEHIIGR LDGMSVQQAL EDNRLYMLDY
501: HDIFLPFLDR INAQDGRKAY GTRTLFFLTG AGTLKPIAIE LRLPPMTDGC ARAKRVLTPP ADATSNWLWQ LAKAHVCSND AGVHQLINHW LRTHACMEPF
601: IIAAHRQMSA MHPIFKLLKP HMRYTLKINA LARQILINGD GVIESGFTPG RYCMEMSSFA YRELWRLDQE GLPADLIRRG MAVEDPTKPH GLRLLIEDYP
701: YATDGLLLWS AITRWCGAYV ATYYPSDESV QADTELQSWY TEAVQTGHAD KRGAPWWPRL TTPGDLASLL TTLLWLTSAQ HAALNFGQYP LGGYIPNRPP
801: LMRRLVPAEG DPEHAHLVAD PHRFFLSALP GLTQATTFMT VIDTLSTHSA DEQYLGERPD EAWTADPAAL AAEREFADEV RRAEEEIGRR NTDAGRRNRC
901: GAGVLPYELM APTSGPGITC RGVPNSVTI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.