Factsheet for Zm00001d013493_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033624_P001	Maize	cytosol	93.69	93.69
EER93611	Sorghum	cytosol	93.46	93.36
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	78.69	79.59
TraesCS4B01G037800.1	Wheat	cytosol	74.52	75.28
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	74.41	75.17
TraesCS4A01G275900.1	Wheat	cytosol, unclear	74.18	74.94
TraesCS4D01G035100.1	Wheat	cytosol	74.18	74.94
TraesCS3B01G602500.1	Wheat	cytosol	68.32	68.79
Zm00001d033623_P003	Maize	cytosol	65.84	67.36
TraesCS3B01G605700.1	Wheat	cytosol	67.08	67.23
GSMUA_Achr1P22970_001	Banana	cytosol	63.81	66.9
KRH35534	Soybean	cytosol	33.6	66.52
CDY70916	Canola	cytosol	36.87	64.88
PGSC0003DMT400063654	Potato	cytosol	35.51	64.15
Zm00001d042541_P002	Maize	cytosol	63.02	63.24
VIT_14s0128g00780.t01	Wine grape	cytosol	60.43	62.4
Zm00001d042540_P008	Maize	cytosol	61.78	61.44
VIT_14s0128g00790.t01	Wine grape	cytosol	59.75	60.99
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.96	60.74
PGSC0003DMT400028158	Potato	cytosol	58.85	60.56
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.74	60.44
Bra021322.1-P	Field mustard	cytosol	58.17	60.21
KRH68548	Soybean	cytosol	58.06	60.02
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.9	59.75
AT1G55020.1	Thale cress	cytosol	57.61	59.49
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.61	59.42
PGSC0003DMT400063446	Potato	cytosol	53.66	59.2
KRG91271	Soybean	cytosol	57.05	58.97
PGSC0003DMT400054145	Potato	cytosol	57.05	58.97
PGSC0003DMT400081370	Potato	cytosol	57.72	58.38
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.72	58.38
PGSC0003DMT400063461	Potato	cytosol	45.66	58.36
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	56.14	58.04
KRH16725	Soybean	cytosol	15.11	58.01
Solyc01g099180.2.1	Tomato	cytosol	55.81	57.96
VIT_05s0020g03170.t01	Wine grape	cytosol	57.16	57.88
KRH33939	Soybean	cytosol, endoplasmic reticulum	56.03	57.46
PGSC0003DMT400063452	Potato	cytosol	51.52	57.2
KRH10050	Soybean	endoplasmic reticulum	55.13	57.06
VIT_06s0004g01580.t01	Wine grape	cytosol	21.53	57.01
Bra039948.1-P	Field mustard	cytosol	56.93	56.93
Solyc01g099200.2.1	Tomato	cytosol, plastid	53.78	56.72
CDY46325	Canola	cytosol	56.26	56.58
Solyc09g075870.1.1	Tomato	cytosol	54.45	56.56
CDY38326	Canola	cytosol	56.48	56.48
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.43	56.39
PGSC0003DMT400063469	Potato	cytosol	53.44	56.23
AT3G22400.1	Thale cress	cytosol	56.14	56.21
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.57	55.89
PGSC0003DMT400063477	Potato	cytosol	53.66	55.61
KRH44090	Soybean	endoplasmic reticulum	53.89	55.58
Solyc01g099210.2.1	Tomato	cytosol	54.0	55.5
KRH57987	Soybean	cytosol	16.12	55.43
Bra023829.1-P	Field mustard	cytosol	56.37	55.37
KRH23266	Soybean	cytosol	51.52	55.33
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.33	55.26
KRH10053	Soybean	endoplasmic reticulum	52.99	55.1
KRH44095	Soybean	endoplasmic reticulum	53.78	55.08
CDY64191	Canola	cytosol	56.14	54.91
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.44	54.8
KRH44093	Soybean	endoplasmic reticulum	52.09	54.61
KRH47525	Soybean	endoplasmic reticulum	53.44	54.61
KRH44094	Soybean	endoplasmic reticulum	53.21	54.44
KRH23268	Soybean	endoplasmic reticulum	52.31	54.4
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.54	54.25
KRH44097	Soybean	cytosol, endoplasmic reticulum	52.99	54.15
KRH47067	Soybean	endoplasmic reticulum	52.2	53.59
KRH23269	Soybean	endoplasmic reticulum	49.61	53.53
KRH47064	Soybean	endoplasmic reticulum	32.92	51.23
KRH47069	Soybean	endoplasmic reticulum	26.04	50.77
KRG88464	Soybean	cytosol	25.93	50.44
KRH13357	Soybean	endoplasmic reticulum	13.53	49.59
KRH44092	Soybean	nucleus	47.35	49.01
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	26.38	45.79
Zm00001d041204_P001	Maize	cytosol	43.74	45.65
Solyc01g099150.2.1	Tomato	nucleus	43.29	44.55
CDY43490	Canola	cytosol, plasma membrane	58.17	42.89
Zm00001d002000_P003	Maize	cytosol, mitochondrion, plastid	41.71	40.93
Zm00001d053675_P001	Maize	plastid	40.36	39.56
Zm00001d015852_P004	Maize	plastid	39.91	38.86
Zm00001d003533_P001	Maize	plastid	40.7	38.36
Zm00001d025524_P001	Maize	plastid	39.8	38.0
Zm00001d027893_P001	Maize	plastid	40.47	37.09
Zm00001d031449_P001	Maize	mitochondrion	39.91	37.03

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100037804	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
MapMan:50.1.12	UniProt:A1XCI0	ProteinID:AQK63679.1	EMBL:BT063599	EMBL:DQ335763	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF49	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0000D6D828	EnsemblPlantsGene:Zm00001d013493
EnsemblPlants:Zm00001d013493_P001	EnsemblPlants:Zm00001d013493_T001	:	:	:	:

Description

lipoxygenase5 lipoxygenase5

Coordinates

chr5:-:12701180..12706156

Molecular Weight (calculated)

100362.0 Da

IEP (calculated)

6.827

GRAVY (calculated)

-0.430

Length

887 amino acids

Sequence
(BLAST)

001: MFWHGVADRL TGKNKEAWSE GKIRGTVRLV KKEVLDVGDF NASLLDGVHR ILGWDDGVAF QLVSATAADP SNGGRGKVGK AAHLEEAVVS LKSTADGETV
101: YRVSFEWDES QGIPGAVLVR NLQHAEFFLK TLTLEGVPGK GTVVFVANSW VYPHKLYSQE RIFFANDTYL PSKMPAALVP YRQDELKILR GDDNPGPYQE
201: HDRVYRYDYY NDLGDPDKGE EHARPILGGS QEHPYPRRCR TGRHPTKKDP NSESRLFLLN LNIYVPRDER FGHLKMSDFL GYSLKTIIEA VLPTLGTFVD
301: DTPKEFDSFE DILGLYELGP EAPNNPLIAE IRKKIPSEFL RSILPNGSHD HPLKMPLPNV IKSDVLKKAP EFKFGWRTDE EFARETLAGV NPVIIKRLTE
401: FPAKSTLDPR QYGDHTSKIT EAHIRHNMGG LSVQNALRNK RLFILDHHDH FMPYLDEINE LEGNFIYASR TLLFLKDDGT LKPLAIELSL PHPDGQQRGA
501: VSKVYTPAHT GVEGHVWQLA KAYACVNDSA WHQLISHWLN THAVIEPFVI ATNRQLSVVH PVHKLLSPHY RDTLNINALA RQTLINAGGV FERTVFPAKY
601: ALGMSADVYK SWNFNEQALP ADLVKRGVAV PDQSSPYGVR LLIKDYPYAV DGLVIWWAIE RWVKEYLDIY YPNDGELQRD VELQAWWKEV REEAHGDLKD
701: RDWWPRMDTV QQLARACTTI IWVASALHAA VNFGQYPYAG YLPNRPTASR RPMPEPGSHD YKKLGAGQKE ADMVFIRTIT SQFQTILGIS LIEILSKHSS
801: DEVYLGQRDE PDRWTSDAKA LDAFKRFGSR LVQIENRIKT MNDSPDLKNR KGPVEMPYML LYPNTSDVTG EKAEGLTAMG IPNSISI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.