Factsheet for Solyc03g122340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT1G17420.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058933	Potato	plastid	96.48	95.84
KRH06197	Soybean	nucleus	76.87	75.7
KRH47615	Soybean	nucleus	77.2	75.62
VIT_09s0002g01080.t01	Wine grape	cytosol	75.33	73.79
KRH69027	Soybean	plastid	73.13	73.7
KRG97300	Soybean	plastid	72.25	72.97
AT1G17420.1	Thale cress	cytosol, plastid	73.68	72.8
CDY21750	Canola	cytosol, mitochondrion, plastid	73.13	72.25
CDX82146	Canola	plastid	67.4	72.0
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	72.8	71.93
CDX81825	Canola	cytosol	72.58	71.71
AT1G72520.1	Thale cress	plastid	73.02	71.6
CDY64617	Canola	cytosol	72.14	71.27
CDX96769	Canola	cytosol	72.14	71.27
Bra008037.1-P	Field mustard	plastid	72.03	71.16
Bra016602.1-P	Field mustard	cytosol	71.92	71.06
CDY49853	Canola	plastid	71.92	71.06
HORVU5Hr1G055110.2	Barley	mitochondrion	26.65	68.56
GSMUA_Achr9P16020_001	Banana	plastid	63.77	66.1
GSMUA_Achr10P...	Banana	cytosol	63.66	65.68
GSMUA_Achr3P07870_001	Banana	plastid	63.33	65.42
GSMUA_Achr8P22700_001	Banana	plastid	60.79	65.09
Os04t0447100-01	Rice	cytosol	56.06	63.94
Os03t0179900-01	Rice	plastid	64.54	63.83
EER95400	Sorghum	mitochondrion	64.76	63.64
HORVU4Hr1G076570.6	Barley	cytosol, plastid	63.44	62.88
TraesCS4B01G295200.1	Wheat	plastid	63.77	62.73
TraesCS4D01G294100.1	Wheat	plastid	63.22	62.26
TraesCS4A01G009400.1	Wheat	plastid	63.22	62.19
Zm00001d027893_P001	Maize	plastid	64.87	60.85
TraesCS2D01G313400.1	Wheat	plastid	59.69	59.56
TraesCS2B01G333600.1	Wheat	plastid	60.13	59.54
EES10882	Sorghum	plastid	60.02	58.98
TraesCS2A01G315100.2	Wheat	plastid	60.13	58.09
Zm00001d003533_P001	Maize	plastid	59.58	57.49
Zm00001d025524_P001	Maize	plastid	58.48	57.16
Solyc01g009680.2.1	Tomato	plastid	27.09	55.53
Solyc05g014790.2.1	Tomato	plastid	53.41	53.24
Solyc01g006560.2.1	Tomato	plastid	45.81	46.12
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	42.95	45.35
Solyc01g006540.2.1	Tomato	plastid	44.49	45.09
Solyc09g055900.2.1	Tomato	cytosol	22.8	44.81
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	42.07	44.32
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	41.85	44.13
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	41.52	43.94
Solyc01g099180.2.1	Tomato	cytosol	41.3	43.91
Solyc12g011040.1.1	Tomato	nucleus, plastid	42.73	43.5
Solyc01g099210.2.1	Tomato	cytosol	41.19	43.34
Solyc09g075860.2.1	Tomato	cytosol, nucleus	41.85	43.33
Solyc01g099200.2.1	Tomato	cytosol, plastid	39.87	43.04
Solyc09g075870.1.1	Tomato	cytosol	39.87	42.39
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	18.94	33.66
Solyc01g099150.2.1	Tomato	nucleus	30.29	31.9
Solyc09g055890.2.1	Tomato	cytosol	12.0	29.38

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	UniProt:K4BN32	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:Solyc03g122340.2	EnsemblPlants:Solyc03g122340.2.1	UniParc:UPI00027659EC	SEG:seg	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4BN32]

Coordinates

chr3:+:70218660..70223113

Molecular Weight (calculated)

102312.0 Da

IEP (calculated)

7.026

GRAVY (calculated)

-0.402

Length

908 amino acids

Sequence
(BLAST)

001: MALAKEIMGI SLLEKSSSMA LLNPNNYHKE NHLWFNQQFQ GRRNLSRRKA YRQSTMAAIS ENLVKVVPEK AVKFKVRAVV TVRNKNKEDL KETIVKHLDA
101: FTDKIGRNVA LELISTDIDP DTKGPKKSNQ AVLKDWSKKS NLKTERVNYT AEFIVDSNFG NPGAITVTNK HQQEFFLESI TIEGFACGPV HFPCNSWVQP
201: KKDHPGKRIF FSNQPYLPDE TPAGLKSLRE RELRELRGDG KGVRKLSDRI YDYDIYNDLG NPDRGIDFAR PKLGGEGNVA YPRRCRSGRV PTDTDISAES
301: RVEKPNPTYV PRDEQFEESK MNTFSTSRLK ATLHNLIPSL MASISSNNHD FKGFSDIDSL YSKGLLLKLG LQDEVLKKLP LPKVVSTIKE GDLLKYDTPK
401: ILSKDKFAWL RDDEFARQAI AGVNPVSIEK LQVFPPVSKL DPEIYGPQES ALKEEHILGH LNGMTVQEAL DANKLFILDH HDVYLPFLDR INALDGRKAY
501: ATRTIYFLSD VGTLKPIAIE LSLPQTGPSS RSKRVVTPPV CATGNWMWQI AKAHVCANDA GVHQLVNHWL RTHASLEPFI LAAHRQLSAM HPIYKLLDPH
601: MRYTLEINGL ARQSLINADG VIEACFTPGR YCMEISAAAY KNWRFDLEGL PADLIRRGMA VPDATQPYGL KLLIEDYPYA ADGLMIWGAI EGWVRDYVDH
701: YYPSSAQVCS DRELQAWYTE TINVGHVDLR NEDWWPTLAT PEDLISILTT LIWLASAQHA ALNFGQYPYS GYVPNRPPLM RRLIPDENDP EYAVFLADPQ
801: KYFFSALPSL LQATKFMAVV DTLSTHSPDE EYIGERQQPS TWTGDAEIVE AFYKFSAEIG RIEKEIDERN ADTNLKNRCG AGVLPYELLA PSSGPGVTCR
901: GVPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.