CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	EER91265	AT4G26630.1	25387881
AT1G17420.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027893_P001	Maize	plastid	94.81	90.5
HORVU5Hr1G055110.2	Barley	mitochondrion	33.55	87.82
Os03t0179900-01	Rice	plastid	86.04	86.6
HORVU4Hr1G076570.6	Barley	cytosol, plastid	83.23	83.95
TraesCS4D01G294100.1	Wheat	plastid	83.66	83.84
TraesCS4A01G009400.1	Wheat	plastid	83.66	83.75
TraesCS4B01G295200.1	Wheat	plastid	83.55	83.64
GSMUA_Achr10P...	Banana	cytosol	68.83	72.27
Solyc03g122340.2.1	Tomato	cytosol	63.64	64.76
PGSC0003DMT400058933	Potato	plastid	63.53	64.22
VIT_00s0265g00170.t01	Wine grape	cytosol	34.85	63.76
CDY21750	Canola	cytosol, mitochondrion, plastid	62.99	63.33
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	62.77	63.11
CDX81825	Canola	cytosol	62.66	63.0
AT1G17420.1	Thale cress	cytosol, plastid	62.66	63.0
VIT_09s0002g01080.t01	Wine grape	cytosol	63.2	63.0
EES10882	Sorghum	plastid	62.66	62.66
CDY64617	Canola	cytosol	62.01	62.35
AT1G72520.1	Thale cress	plastid	62.34	62.2
CDX96769	Canola	cytosol	61.69	62.02
KRG97300	Soybean	plastid	60.28	61.96
KRH06197	Soybean	nucleus	61.8	61.93
Bra016602.1-P	Field mustard	cytosol	61.58	61.92
KRH69027	Soybean	plastid	60.28	61.82
KRH47615	Soybean	nucleus	61.8	61.6
CDX82146	Canola	plastid	56.39	61.29
Bra008037.1-P	Field mustard	plastid	60.71	61.04
CDY49853	Canola	plastid	60.71	61.04
KRH10882	Soybean	cytosol	24.78	52.77
KRH21441	Soybean	cytosol	49.78	50.55
KRH50048	Soybean	cytosol	47.51	48.24
OQU80925	Sorghum	cytosol	42.86	45.78
EES04028	Sorghum	cytosol	40.04	42.38
EER93612	Sorghum	cytosol	39.72	42.38
EES04025	Sorghum	cytosol	39.39	41.94
KXG29701	Sorghum	plastid	40.91	41.22
KXG24148	Sorghum	cytosol	37.88	40.84
EER93611	Sorghum	cytosol	39.07	40.65
KXG37783	Sorghum	cytosol	38.64	39.98
KXG23911	Sorghum	cytosol, plastid	22.51	38.17
KXG27309	Sorghum	mitochondrion, plastid	35.39	36.05

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EntrezGene:8082015	ProteinID:ACV84250.1	UniProt:C5WVT3	EnsemblPlants:EER95400	ProteinID:EER95400	ProteinID:EER95400.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	EnsemblPlantsGene:SORBI_3001G483400	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI0001A82EEC	RefSeq:XP_002468402.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:75467368..75473615

Molecular Weight (calculated)

102934.0 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.365

Length

924 amino acids

Sequence
(BLAST)

001: MAAPCRELAG LRRGPAAARP PVPGRRGANE LCLAPFHHRA PQQQRQRQRR GRGLKVVAAI SEDLPRLAAP GTGTGNKGAA EGRRPEKVLV RAALTVRRKH
101: KEDLKEAMAG HLDALWDMVG RSVALELIST KIHARTKKPL QSGQASIKDW CQKRGVKGEH VVYTAEFMVD SDFGEPGAIT VANRHHREFF LESIVVEGGL
201: PCGPVHFACN SWVQSTRELP GKRVFFSNKP YLPSETPPGL RELRDKELKD LRGDGTGVRK LSDRIYDYAM YNDLGNPDRG KEFTRPILGG DKIPYPRRCR
301: TGRPPTDTSM MAESRVEKPH RIYVPRDEAF EELKQGAFSS GRLRAVLHTL IPSMIATISA ETHSFQGFHH VDNLYKEGLR LKLGLQEHLF QKIPLVQKIQ
401: ESSEGMLRYD TPRILSKDKF AWLRDDEFAR QTVAGINPVS ITRLTVFPPV SKLDPAIYGS PESSITEAHI AGQLNGLTVQ QAVDEAKLFI LDYHDAYLPF
501: LDRINAIEGR KAYATRTILF LTKAGTLKPI AIELSLPPSK AGQPQPSKVL TPPSDATSNW LWMLAKAHVS SNDAGVHQLV NHWLRTHAIM EPFILAAHRR
601: MSAMHPVFKL LHPHMRYTLE INALARQSLI SADGVIESCF TPGPVSFEIS AAYYHNHWRF DLEGLPSDLV RRGVAVEDAS QPHGIRLLIE DYPYANDGLL
701: LWSAIRNWVE SYVQLYYPDA GTVQSDDELQ GWYHETVHVG HADIRHAPWW PSLSTPADLA SILTTLIWLA SAQHAALNFG QYPLGGYVPN RPPLMRRLLP
801: DPERDAAEYA AFLADPHRFF LNAMPGVLEA TKFMAVVDTL STHSPDEEYL GEGRDEPWTG DAAAVAAHAM FEADVRRAEE AIETRNADQR RKNRCGAGVL
901: PYELLAPSSP PGVTCRGVPN SISI

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.