Factsheet for Bra004081.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07417	Canola	plastid	99.02	99.02
Bra033991.1-P	Field mustard	plastid	90.52	91.02
AT1G67560.1	Thale cress	plastid	85.95	86.04
PGSC0003DMT400034472	Potato	cytosol	35.73	73.38
VIT_01s0010g02750.t01	Wine grape	plastid	64.49	64.35
KRH42646	Soybean	plastid	64.16	63.95
Solyc05g014790.2.1	Tomato	plastid	61.76	62.24
PGSC0003DMT400045047	Potato	cytosol, plastid	61.11	61.65
GSMUA_Achr6P28450_001	Banana	plastid	55.66	58.74
Bra016602.1-P	Field mustard	cytosol	48.47	48.42
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	48.26	48.2
Bra008037.1-P	Field mustard	plastid	47.39	47.33
Bra004057.1-P	Field mustard	cytosol	41.94	43.21
Bra004060.1-P	Field mustard	plastid	42.27	43.16
Bra004059.1-P	Field mustard	plastid	40.3	42.73
Bra021322.1-P	Field mustard	cytosol	39.76	42.59
Bra003526.1-P	Field mustard	plastid	41.83	42.48
Bra022535.1-P	Field mustard	plastid	34.53	39.09
Bra039948.1-P	Field mustard	cytosol	37.36	38.67
Bra023829.1-P	Field mustard	cytosol	37.8	38.43
Bra004058.1-P	Field mustard	plastid	41.72	36.2

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EnsemblPlantsGene:Bra004081	EnsemblPlants:Bra004081.1	EnsemblPlants:Bra004081.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
UniProt:M4CIP7	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF60
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002541381	SEG:seg	:

Description

AT1G67560 (E=0.0) | lipoxygenase family protein

Coordinates

chrA07:-:16717656..16722330

Molecular Weight (calculated)

104720.0 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.497

Length

918 amino acids

Sequence
(BLAST)

001: MFIASPVKTN LYGVGLVRSP AFPVLPRRLQ HRVPLSRQVR AVISREEKAV DQEDEKSINR SVVYSSSPAF PWQRSKYTGT KTVMAVVKIR KKMREKLTER
101: LGHQFELLMK AVGQGMLVQL VSEDIDPETG SGRRSLETPV LGLPKARNDP RNLEFTATFT VPTDFGKPGA ILVTNLLSSE ICLSEIIIRD GSDTILFPGN
201: TWIHSRNENP EGRIIFRSQP CLPSQTPAGI KELREKDLRS VRGNGKGERK PHERIYDYDV YNDLGDPRKK DRVRPILGGP ERPYPRRCRS GRTLVSRDPP
301: CESRGKDKDE FYVPRDEEFE DIKRDTFTAG RLKALFHNLV PSIAAALSNL DIPFTCFSDI DKLYKCDIVL RPTEPKDTGL GGFFGSFVDG ILNVGETLLK
401: YDTPAVIKSD RFAWLRDNEF GRQALAGVNP VNIELLKELP IRSKLDPAVY GPQESALTEE VIAKEVLHYG MTLEQAFEEQ RLFLLDYHDM LLPFVDKINS
501: LKEDPRKTYA SRTIFFYSKA GALRPLAIEL SLPPTPDNEN KFVYVHGHDA TTHWMWKLAK AHVCSNDAGV HQLVNHWLRT HASMEPYIIA TNRQLSTMHP
601: VYKLLHPHMR YTLEINARAR KSLINGGGII ESCFTPGKYS MELSSAAYKS MWRFDMEGLP ADLVRRGMAE EDASEECGVK LVIEDYPYAA DGLLIWKAIK
701: NLVESYVKHF YSDTKSIASD FELQAWWDEI KNKGHYDKKD EPWWPKLNTA QDLTEILTNM IWIASGQHAA INFGQYPFGG YVPNRPTLLR KLIPQENDPE
801: YEMFMRNPQY SFLSSLPTQL QATKVMAVQE TLSTHSADEE YLIDLKENQR RWFQDEEVVK YFSKFSEELE EIEKKINKRN KDKKLKNRTG AGMPPYELLL
901: PTSPHGVTGR GIPNSISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.