Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18110.1 | KXG29701 | AT3G45140.1 | 11117257 |
| AT5G18110.1 | OQU80925 | AT3G45140.1 | 11117257 |
| AT5G18110.1 | EES12452 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028515_P001 | Maize | cytosol | 96.07 | 96.07 |
| Os03t0262400-01 | Rice | cytosol | 81.22 | 81.94 |
| TraesCS4D01G216800.1 | Wheat | cytosol | 82.53 | 81.47 |
| TraesCS4B01G216300.1 | Wheat | cytosol | 82.1 | 81.03 |
| HORVU4Hr1G061500.4 | Barley | cytosol | 82.1 | 81.03 |
| TraesCS4A01G087900.1 | Wheat | cytosol | 81.66 | 80.6 |
| GSMUA_Achr4P11110_001 | Banana | cytosol | 75.55 | 76.55 |
| GSMUA_Achr3P29580_001 | Banana | cytosol | 72.93 | 73.89 |
| VIT_08s0007g07290.t01 | Wine grape | cytosol | 72.05 | 73.33 |
| PGSC0003DMT400060836 | Potato | cytosol | 71.18 | 73.09 |
| KRH70165 | Soybean | cytosol | 73.8 | 72.84 |
| Solyc10g080660.1.1 | Tomato | cytosol, nucleus | 70.74 | 72.65 |
| Bra006439.1-P | Field mustard | cytosol | 69.0 | 72.48 |
| KRH08499 | Soybean | cytosol | 74.24 | 72.34 |
| CDX70795 | Canola | cytosol | 68.56 | 72.02 |
| CDX78777 | Canola | cytosol | 68.12 | 71.56 |
| AT5G18110.1 | Thale cress | cytosol | 67.25 | 69.68 |
| CDY38487 | Canola | cytosol | 65.07 | 69.63 |
| Bra023664.1-P | Field mustard | cytosol | 65.5 | 66.96 |
| CDY02645 | Canola | cytosol | 65.5 | 66.96 |
| CDY49143 | Canola | cytosol | 65.07 | 66.52 |
| CDY53257 | Canola | cytosol | 65.07 | 66.52 |
| CDY45630 | Canola | cytosol | 65.07 | 66.52 |
| Bra002134.1-P | Field mustard | cytosol | 50.22 | 60.85 |
| HORVU2Hr1G094490.1 | Barley | plastid | 37.99 | 53.05 |
| EER94108 | Sorghum | cytosol | 29.26 | 31.9 |
| EES02138 | Sorghum | cytosol | 27.51 | 28.64 |
Protein Annotations
| MapMan:17.4.2.6 | Gene3D:3.30.760.10 | EntrezGene:8078815 | UniProt:C5WQ71 | ncoils:Coil | EnsemblPlants:EER92511 |
| ProteinID:EER92511 | ProteinID:EER92511.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023398 | PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 |
| PANTHER:PTHR11960:SF18 | EnsemblPlantsGene:SORBI_3001G429100 | SUPFAM:SSF55418 | unigene:Sbi.6305 | InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E |
| InterPro:TIF_eIF_4E_CS | UniParc:UPI0001A82643 | RefSeq:XP_002465513.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:+:70804848..70808500
Molecular Weight (calculated)
26572.2 Da
IEP (calculated)
6.724
GRAVY (calculated)
-0.755
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAVEKKEA EQEEQQLPHA RKDDAPAAAE EDEADAEETE RRNRDLKAGL HPLRRKLVLW YTRRTPGARS QAYEDNIKKI IDFSTVESFW VCYCHLARPS
101: SLPSPTDLHL FKDGIRPLWE DPANQNGGKW IIRFKKAVSG RFWEDLVLVL VGDQLEYSDD VCGVVLSVRF NEDILSVWNR NASDHQAVMA LRDSIKRHLK
201: LPHSYLMEYK PHDASRRDNS SYRNTWLRG
101: SLPSPTDLHL FKDGIRPLWE DPANQNGGKW IIRFKKAVSG RFWEDLVLVL VGDQLEYSDD VCGVVLSVRF NEDILSVWNR NASDHQAVMA LRDSIKRHLK
201: LPHSYLMEYK PHDASRRDNS SYRNTWLRG
001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
Arabidopsis Description
NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.