Factsheet for HORVU2Hr1G094490.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G086240.1
HORVU3Hr1G047210.1
HORVU5Hr1G001180.1
HORVU6Hr1G000510.1
HORVU6Hr1G023180.1
HORVU6Hr1G033600.1
HORVU7Hr1G006320.4
HORVU7Hr1G050680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	HORVU3Hr1G047210.1	AT3G45140.1	11117257
AT5G18110.1	HORVU5Hr1G001180.1	AT3G45140.1	11117257
AT5G18110.1	HORVU6Hr1G000510.1	AT3G45140.1	11117257
AT5G18110.1	HORVU6Hr1G033600.1	AT3G45140.1	11117257
AT5G18110.1	HORVU7Hr1G006320.4	AT3G45140.1	11117257
AT5G18110.1	HORVU7Hr1G050680.1	AT3G45140.1	11117257
AT5G18110.1	HORVU2Hr1G086240.1	AT5G57870.1	21798944
AT5G18110.1	HORVU6Hr1G023180.1	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G061500.4	Barley	cytosol	58.54	41.38
TraesCS4D01G216800.1	Wheat	cytosol	57.93	40.95
TraesCS4B01G216300.1	Wheat	cytosol	57.93	40.95
TraesCS4A01G087900.1	Wheat	cytosol	57.93	40.95
Os03t0262400-01	Rice	cytosol	54.27	39.21
Bra002134.1-P	Field mustard	cytosol	44.51	38.62
Zm00001d028515_P001	Maize	cytosol	53.66	38.43
PGSC0003DMT400060836	Potato	cytosol	51.83	38.12
EER92511	Sorghum	cytosol	53.05	37.99
Solyc10g080660.1.1	Tomato	cytosol, nucleus	50.61	37.22
VIT_08s0007g07290.t01	Wine grape	cytosol	50.61	36.89
Bra006439.1-P	Field mustard	cytosol	48.17	36.24
GSMUA_Achr3P29580_001	Banana	cytosol	49.39	35.84
GSMUA_Achr4P11110_001	Banana	cytosol	49.39	35.84
CDX78777	Canola	cytosol	47.56	35.78
CDX70795	Canola	cytosol	47.56	35.78
CDY49143	Canola	cytosol	48.17	35.27
CDY53257	Canola	cytosol	48.17	35.27
Bra023664.1-P	Field mustard	cytosol	48.17	35.27
CDY02645	Canola	cytosol	48.17	35.27
KRH70165	Soybean	cytosol	49.39	34.91
KRH08499	Soybean	cytosol	50.0	34.89
CDY45630	Canola	cytosol	47.56	34.82
CDY38487	Canola	cytosol	45.12	34.58
AT5G18110.1	Thale cress	cytosol	46.34	34.39
HORVU1Hr1G039260.2	Barley	cytosol	23.17	18.1
HORVU3Hr1G113940.2	Barley	cytosol	23.17	17.67

Protein Annotations

Gene3D:3.30.760.10	MapMan:35.1	UniProt:A0A287J059	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU2Hr1G094490	EnsemblPlants:HORVU2Hr1G094490.1	InterPro:IPR023398	PFAM:PF01652
ScanProsite:PS00813	PANTHER:PTHR11960	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS
UniParc:UPI000B47DB2A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:664937221..664938271

Molecular Weight (calculated)

16858.3 Da

IEP (calculated)

11.790

GRAVY (calculated)

-0.706

Length

164 amino acids

Sequence
(BLAST)

001: MEAAVEXRCP SRRSSYSRRX PGPXTXVPPP SSRRTRRGRG ERAPQPRAQG RLHPLRRKLV LWYTRRTPGT RSQSYEDNIK KIVDFSTVES FWVCYCHLAR
101: PSALPSPTDL HLFKEGVRPL WEDPANRNGG KWIIRFKKAV SGAFLGRILY XXXXXXXXXX XXXX

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.