Factsheet for Os02t0611500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0139400-01
Os02t0174100-02
Os02t0221300-01
Os06t0663500-00
Os06t0703500-02
Os10t0467600-01
Os11t0104866-00
Os11t0104900-00
Os12t0104766-00
Os12t0104800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Os02t0139400-01	AT1G27360.1	21798944
AT2G24050.1	Os02t0174100-02	AT1G27360.1	21798944
AT2G24050.1	Os06t0663500-00	AT1G27360.1	21798944
AT2G24050.1	Os06t0703500-02	AT1G27360.1	21798944
AT2G24050.1	Os11t0104866-00	AT3G08530.1	21798944
AT2G24050.1	Os11t0104900-00	AT3G08530.1	21798944
AT2G24050.1	Os12t0104766-00	AT3G08530.1	21798944
AT2G24050.1	Os12t0104800-01	AT3G08530.1	21798944
AT2G24050.1	Os10t0467600-01	AT5G35620.1	21798944
AT5G57870.1	Os02t0221300-01	AT1G72730.1	21798944
AT5G57870.1	Os11t0104866-00	AT3G08530.1	21798944
AT5G57870.1	Os11t0104900-00	AT3G08530.1	21798944
AT5G57870.1	Os12t0104766-00	AT3G08530.1	21798944
AT5G57870.1	Os12t0104800-01	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06000_001	Banana	cytosol	3.97	75.61
Os04t0499300-01	Rice	plastid	67.05	64.89
GSMUA_Achr4P05990_001	Banana	cytosol	11.41	60.54
CDY69274	Canola	cytosol, mitochondrion	25.13	59.94
VIT_11s0037g00490.t01	Wine grape	plastid	60.9	59.82
Solyc07g005810.2.1	Tomato	plastid	58.08	58.6
PGSC0003DMT400029102	Potato	cytosol, plastid	58.33	58.33
GSMUA_Achr9P22750_001	Banana	plastid	55.38	58.06
GSMUA_AchrUn_...	Banana	cytosol	55.38	57.91
CDY28211	Canola	mitochondrion	35.0	57.84
PGSC0003DMT400020464	Potato	cytosol	57.31	57.83
Solyc12g009960.1.1	Tomato	nucleus	56.92	57.44
KRH55033	Soybean	endoplasmic reticulum	56.54	56.9
KRH63081	Soybean	endoplasmic reticulum	56.03	56.46
KRH72326	Soybean	endoplasmic reticulum	56.54	56.25
KRH03030	Soybean	endoplasmic reticulum	56.79	56.15
AT5G57870.1	Thale cress	plastid	55.13	55.13
CDY28203	Canola	cytosol	36.03	54.99
CDY32742	Canola	plastid	53.59	54.29
Bra020407.1-P	Field mustard	plastid	53.46	54.16
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.28	54.13
Bra011218.1-P	Field mustard	plastid	37.95	54.11
CDY02774	Canola	plastid	52.95	53.5
CDY39236	Canola	cytosol	50.13	52.91
Bra011211.1-P	Field mustard	plastid	50.77	52.87
CDX72262	Canola	cytosol	50.51	52.81
CDX68687	Canola	plastid	50.51	52.67
Bra024051.1-P	Field mustard	cytosol	50.38	52.54
AT2G24050.1	Thale cress	plastid	49.1	51.27
GSMUA_Achr3P28040_001	Banana	cytosol	28.85	49.89
AT1G62410.1	Thale cress	cytosol	12.44	43.5
Solyc07g005780.1.1	Tomato	cytosol	24.87	43.11
GSMUA_Achr4P05970_001	Banana	cytosol	8.33	43.05
AT4G30680.1	Thale cress	mitochondrion, plastid	13.85	41.06
GSMUA_Achr4P12750_001	Banana	cytosol	59.74	40.17
Os06t0520600-01	Rice	extracellular	23.08	25.32
Os06t0519400-01	Rice	nucleus	6.03	16.85
Os07t0555200-01	Rice	nucleus, plastid	6.15	3.7

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	EntrezGene:4329958	EMBL:AK072083	InterPro:ARM-type_fold	ProteinID:BAD19680.1
ProteinID:BAF09321.1	ProteinID:BAS79722.1	ncoils:Coil	ProteinID:EAZ23786.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413
GO:GO:0006417	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
EnsemblPlantsGene:Os02g0611500	EnsemblPlants:Os02t0611500-01	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253
PANTHER:PTHR23253:SF32	UniProt:Q6K641	SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI000037591D
RefSeq:XP_015624699.1	SEG:seg	:	:	:	:

Description

Similar to Eukaryotic initiation factor-like protein. (Os02t0611500-01)

Coordinates

chr2:-:24068339..24074731

Molecular Weight (calculated)

85994.2 Da

IEP (calculated)

7.344

GRAVY (calculated)

-0.406

Length

780 amino acids

Sequence
(BLAST)

001: MTQADQAVIS LRPGGGGGIG GPRAGRLFPF GASTGSLDFL RPRGGASSGF AAKLGDLRFE PLERVRYTRD QLVELHEIID IPENILKLKQ DIDIELHGED
101: EPWINNDSSV QTQSYNRYAE TDNRDWRSRI EQPVQTPAIG GEEKSWDKFR EAKESYISSG KQDQFNNQDK LSSQFSAKAQ VGPAPALVKA EVPWSIQRGN
201: LSNKERVLKT VKGILNKLTP EKFDLLKGQL IEAGITTADI LKDVISLIFE KAVLEPTFCP MYAQLCFDLN EKLPSFPSEE PGGKEITFKR VLLNNCQEAF
301: EGADNLRSEV NKLTGLDQEM ERRDKERLVK LRTLGNIRLV GELLKQKMVP EKIVHHIVQE LLGSESNRCP AEENVEAICQ FFNTIGKQLD ENPKSRRFND
401: VYFNRLKDLT TNSQLASRLR FMARDVLDLR SNQWVPRREE MKAKKISEIH REAENNLGLR PGSTASIRTG RTGTGGGGPL SPGAFSMNQP GIVGMLPGMP
501: GARKMPGMPG LGSDDWEVPH SRSKPRADPV RNLTPSLANK PSPNNSRLLP QGSAALISGK TSALVGSGGP LSHGLVVTPS QTTGPPKSLI PAPSVDPIVE
601: QPAAAPKPSS TELQKKTISL LKEYFHILLL HEAQQCIEEL KSPDYYPEVV KEAINLALDK GTNSIDPLLR LLEHLYNKNV FKATDLETGC LLYSSLLDEL
701: AIDLPKAPVH FGEVIGRLVL SHCLSIEVVE DTLKKIEDSF FRAAVFEAMM KIMKANPSGQ AILGSHVAKI DACSKLLSSE

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.