Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0611500-01 | Rice | cytosol | 16.85 | 6.03 |
| Os04t0499300-01 | Rice | plastid | 14.7 | 5.09 |
| Os06t0520600-01 | Rice | extracellular | 9.68 | 3.8 |
| CDX89055 | Canola | nucleus | 6.81 | 2.09 |
| GSMUA_Achr2P18280_001 | Banana | nucleus | 6.81 | 1.86 |
| Os07t0555200-01 | Rice | nucleus, plastid | 3.94 | 0.85 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:2.30.30.1190 | EMBL:AK119453 | ProteinID:BAF19655.1 | ProteinID:BAS98000.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | EnsemblPlantsGene:Os06g0519400 |
| EnsemblPlants:Os06t0519400-01 | PFAM:PF00642 | PFscan:PS50103 | PANTHER:PTHR12506 | PANTHER:PTHR12506:SF31 | UniProt:Q0DBW8 |
| SMART:SM00356 | SUPFAM:SSF90229 | UniParc:UPI0000E12821 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 42Zinc finger, CCCH-type domain containing protein. (Os06t0519400-01)
Coordinates
chr6:+:19020391..19025456
Molecular Weight (calculated)
31060.3 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.687
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQILCECCN SDHRSSSTPM ATTTSSSASD PAAISPTPSQ QHASSTVKTL DDRRPAGTSS SAGETEPKAA VEPQEYPRRP GVPDCSYYVE FGSCKFGMRC
101: LYNHPAKHAG GCDKLEHPQR PGEHDCLHYL RFGRCKYGMN CRFNHPPDRL PQQQVYFPWK ACHCHHSEGK SEAEHVKLNF LGLPLRPGTG LCSYYMNRGI
201: CKFGSNCKFH HPNSGSGHEK WDGSLQTNQI SSGVNIYSVL DHGELNEQPV PSKDDFQVSF VQNIVGFNFY IWCDPELAP
101: LYNHPAKHAG GCDKLEHPQR PGEHDCLHYL RFGRCKYGMN CRFNHPPDRL PQQQVYFPWK ACHCHHSEGK SEAEHVKLNF LGLPLRPGTG LCSYYMNRGI
201: CKFGSNCKFH HPNSGSGHEK WDGSLQTNQI SSGVNIYSVL DHGELNEQPV PSKDDFQVSF VQNIVGFNFY IWCDPELAP
001: MERYGGAGED ESRSDPSHEW SAQGTETGIE ASMWRLGLRG GGGGGETFPE RPDEPDCIYY LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERMGQ
101: PVCQHFMRTG TCKFGASCKY HHPRQGGGGD SVTPVSLNYM GFPLRPGEKE CSYFMRTGQC KFGSTCRYHH PVPPGVQAPS QQQQQQLSAG PTMYPSLQSQ
201: TVPSSQQYGV VLARPQLLPG SYVQSPYGYG QMVLPPGMVP YSGWNPYQAS VSAMPSPGTQ PSMGTSSVYG ITPLSPSAPA YQSGPSSTGV SNKEQTFPQR
301: PEQPECQYFM RTGDCKFGTS CRFHHPMEAA SPEASTLSHI GLPLRPGAVP CTHFAQHGIC KFGPACKFDH SLGSSSLSYS PSPSSLTDMP VAPYPSSLGT
401: LAPSSSSDQC TELISSSSIE PITTTTGGSE TVAAGVSSMT SDVSHPEPAE TNKGDSASNE AKTSS
101: PVCQHFMRTG TCKFGASCKY HHPRQGGGGD SVTPVSLNYM GFPLRPGEKE CSYFMRTGQC KFGSTCRYHH PVPPGVQAPS QQQQQQLSAG PTMYPSLQSQ
201: TVPSSQQYGV VLARPQLLPG SYVQSPYGYG QMVLPPGMVP YSGWNPYQAS VSAMPSPGTQ PSMGTSSVYG ITPLSPSAPA YQSGPSSTGV SNKEQTFPQR
301: PEQPECQYFM RTGDCKFGTS CRFHHPMEAA SPEASTLSHI GLPLRPGAVP CTHFAQHGIC KFGPACKFDH SLGSSSLSYS PSPSSLTDMP VAPYPSSLGT
401: LAPSSSSDQC TELISSSSIE PITTTTGGSE TVAAGVSSMT SDVSHPEPAE TNKGDSASNE AKTSS
Arabidopsis Description
Zinc finger CCCH domain-containing protein 58 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.