Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72939 | Canola | mitochondrion, nucleus | 58.86 | 93.35 |
| CDY67069 | Canola | cytosol | 12.58 | 92.08 |
| CDY53867 | Canola | cytosol | 51.56 | 90.28 |
| CDY11154 | Canola | cytosol | 24.36 | 89.11 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 13.67 | 82.11 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 9.2 | 80.95 |
| CDY72259 | Canola | cytosol | 23.95 | 79.73 |
| CDY49860 | Canola | cytosol | 12.86 | 76.0 |
| CDY54037 | Canola | cytosol | 25.98 | 71.91 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 40.46 | 70.02 |
| CDY39079 | Canola | cytosol | 36.27 | 65.05 |
| CDY02469 | Canola | cytosol | 36.27 | 65.05 |
| CDY10607 | Canola | cytosol | 36.13 | 64.96 |
| CDY08220 | Canola | cytosol | 36.13 | 64.81 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 36.13 | 64.65 |
| CDY55205 | Canola | cytosol | 36.67 | 64.07 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 35.72 | 63.92 |
| CDY24057 | Canola | cytosol | 35.45 | 63.59 |
| CDX97528 | Canola | cytosol | 36.54 | 63.53 |
| Solyc07g040750.1.1 | Tomato | cytosol | 35.18 | 62.95 |
| CDY33073 | Canola | cytosol | 35.05 | 62.86 |
| CDX82505 | Canola | cytosol | 36.27 | 62.62 |
| CDX75739 | Canola | cytosol | 36.4 | 61.7 |
| CDY32586 | Canola | cytosol | 31.39 | 61.38 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 18.0 | 43.32 |
| CDY22956 | Canola | cytosol | 23.27 | 42.16 |
| CDY33416 | Canola | cytosol | 23.14 | 41.91 |
| CDY51692 | Canola | cytosol | 23.14 | 41.91 |
| CDY24617 | Canola | cytosol | 23.14 | 41.91 |
| CDX82280 | Canola | cytosol | 23.14 | 41.91 |
| CDY42205 | Canola | cytosol | 23.0 | 41.67 |
| CDY58940 | Canola | cytosol | 21.52 | 39.36 |
| CDY03623 | Canola | cytosol | 21.52 | 39.36 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 22.06 | 38.72 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 23.0 | 30.91 |
| CDY54061 | Canola | cytosol | 12.99 | 29.45 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 22.87 | 26.41 |
| CDY22577 | Canola | cytosol | 5.28 | 26.17 |
| CDX85725 | Canola | cytosol | 15.43 | 25.79 |
| CDY51112 | Canola | cytosol | 15.29 | 25.68 |
| CDX70383 | Canola | cytosol | 15.43 | 25.5 |
| CDY48935 | Canola | cytosol, plastid | 15.56 | 24.21 |
| CDX71756 | Canola | cytosol | 15.56 | 24.01 |
| CDY71952 | Canola | cytosol | 13.4 | 23.74 |
| CDY58787 | Canola | cytosol | 15.43 | 23.65 |
| CDY07205 | Canola | cytosol | 15.56 | 23.42 |
| CDY51147 | Canola | cytosol | 15.7 | 23.39 |
| CDX78412 | Canola | cytosol | 15.43 | 22.94 |
| CDX85726 | Canola | cytosol | 15.16 | 22.86 |
| CDX69778 | Canola | cytosol | 15.29 | 22.83 |
| CDX91901 | Canola | cytosol | 15.43 | 22.75 |
| CDY37067 | Canola | cytosol | 15.56 | 22.55 |
| CDY27357 | Canola | cytosol, plastid | 15.43 | 22.4 |
| OQU84655 | Sorghum | cytosol | 23.0 | 22.22 |
| CDX74342 | Canola | cytosol | 15.29 | 21.98 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 15.29 | 21.61 |
| CDX67556 | Canola | cytosol | 13.67 | 21.4 |
| CDX76225 | Canola | cytosol | 13.94 | 20.77 |
| CDX95397 | Canola | cytosol | 13.8 | 20.65 |
| CDY13319 | Canola | cytosol | 13.67 | 20.61 |
| Os02t0221300-01 | Rice | cytosol | 24.36 | 20.43 |
| CDY45702 | Canola | cytosol | 5.41 | 19.42 |
| Zm00001d016351_P002 | Maize | nucleus | 21.79 | 18.05 |
| KXG29825 | Sorghum | cytosol | 21.24 | 17.8 |
| Zm00001d016350_P001 | Maize | vacuole | 12.04 | 17.66 |
| CDY37498 | Canola | cytosol, mitochondrion | 2.03 | 16.3 |
| CDY26130 | Canola | cytosol | 2.17 | 15.84 |
| CDY02574 | Canola | plastid | 10.15 | 15.69 |
| CDY47205 | Canola | plastid | 10.01 | 15.48 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 25.17 | 14.6 |
| CDY51111 | Canola | cytosol | 4.74 | 14.06 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 25.44 | 13.99 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 25.03 | 13.86 |
| CDY56825 | Canola | cytosol | 3.79 | 12.28 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 4.74 | 11.71 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:15.5.2.2 | Gene3D:3.40.50.300 | GO:A0A078JKV6 | UniProt:A0A078JKV6 |
| EnsemblPlants:CDY68148 | ProteinID:CDY68148 | ProteinID:CDY68148.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF3511 |
| GO:GO:0000166 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00069970001 | InterPro:Helicase_ATP-bd | InterPro:Histone_H1/H5_H15 | InterPro:Homeobox-like_sf | InterPro:IPR005818 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:IPR017930 | InterPro:IPR036388 | InterPro:Myb_dom | InterPro:P-loop_NTPase | PFAM:PF00249 |
| PFAM:PF00270 | PFAM:PF00538 | PFAM:PF12023 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51195 |
| PFscan:PS51294 | PFscan:PS51504 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| InterPro:SANT/Myb | SMART:SM00487 | SMART:SM00526 | SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF46785 |
| SUPFAM:SSF52540 | UniParc:UPI0004EDFFFF | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
BnaA07g38930DBnaA07g38930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKV6]
Coordinates
chrLK036903:-:121..5477
Molecular Weight (calculated)
82560.6 Da
IEP (calculated)
8.860
GRAVY (calculated)
-0.491
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNQKLKWTG DEEEALRAGI EKHGPGKWKN ILRDPEFAHQ LTNRSNIDLK DKWRNLCVAP GTQCSNDKSR TRKVKEEGVT LASLSPTAAT ATPPSYPNSS
101: SSSPATSLPR SASSDFSVDN NFAVDNKNAP RYDAMIFEAI SELADPNGSD VGSIFSFIEP RHEVPPTFRR VLSSRLRRLA AQGKLSKVSN SKPLLNFYKL
201: PDGSETTTRT TPAPTPKPKE TNVKPRQSYI NQPPSVSQEM IDEAAITAAC KVVEAENKIN VAKAAVEELE KTTKLADETE LMLELSWRGC GLGLSLWGLY
301: RRAQQCVYIH PLVMAGMASE GTQYDPRQFD TKMNAILGEE GQETFYTTYD EVCDSFDTME LRSDLLRGIY AYGFEKPSAI QQRGIIPFCK GLDVIQQAQS
401: GTGKTATFCS GVLQQLDYTL LQCQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILQ SGVHVVVGTP GRVFDMLRRQ SLRADAIKMF
501: VLDEADEMLS RGFKDQIYDI FQLLPSKVQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVDKEEWK LETLCDLYET LAITQSQIQF
601: LELVASEEMF RSKSCREEIT GRRSSITNKY HCLTSNGEAA PSPTNQLPPV MMRSYSASTY SPYKNPTTVR DRDSPNSKSK RRTSKAKKGY KGLCEAEIQR
701: KKRVAGYNVY GVEGKVKGSM KKSFKWFKET CSNAVYGLW
101: SSSPATSLPR SASSDFSVDN NFAVDNKNAP RYDAMIFEAI SELADPNGSD VGSIFSFIEP RHEVPPTFRR VLSSRLRRLA AQGKLSKVSN SKPLLNFYKL
201: PDGSETTTRT TPAPTPKPKE TNVKPRQSYI NQPPSVSQEM IDEAAITAAC KVVEAENKIN VAKAAVEELE KTTKLADETE LMLELSWRGC GLGLSLWGLY
301: RRAQQCVYIH PLVMAGMASE GTQYDPRQFD TKMNAILGEE GQETFYTTYD EVCDSFDTME LRSDLLRGIY AYGFEKPSAI QQRGIIPFCK GLDVIQQAQS
401: GTGKTATFCS GVLQQLDYTL LQCQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILQ SGVHVVVGTP GRVFDMLRRQ SLRADAIKMF
501: VLDEADEMLS RGFKDQIYDI FQLLPSKVQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVDKEEWK LETLCDLYET LAITQSQIQF
601: LELVASEEMF RSKSCREEIT GRRSSITNKY HCLTSNGEAA PSPTNQLPPV MMRSYSASTY SPYKNPTTVR DRDSPNSKSK RRTSKAKKGY KGLCEAEIQR
701: KKRVAGYNVY GVEGKVKGSM KKSFKWFKET CSNAVYGLW
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.