Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56825 | Canola | cytosol | 43.81 | 57.46 |
| CDY51111 | Canola | cytosol | 35.12 | 42.17 |
| Zm00001d011149_P002 | Maize | cytosol | 18.73 | 33.73 |
| Solyc06g066060.2.1 | Tomato | nucleus | 43.14 | 31.46 |
| KXG32708 | Sorghum | cytosol | 44.82 | 31.31 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 44.15 | 31.21 |
| Bra023311.1-P | Field mustard | cytosol | 44.48 | 31.15 |
| AT5G11170.1 | Thale cress | cytosol | 44.48 | 31.15 |
| CDY71952 | Canola | cytosol | 43.14 | 30.94 |
| PGSC0003DMT400053566 | Potato | cytosol | 44.15 | 30.91 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 44.15 | 30.84 |
| KXG22711 | Sorghum | cytosol | 44.15 | 30.77 |
| KRH44441 | Soybean | cytosol, nucleus | 43.81 | 30.75 |
| KRH47464 | Soybean | nucleus | 43.81 | 30.75 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 44.15 | 30.63 |
| CDY51112 | Canola | cytosol | 44.82 | 30.45 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 44.15 | 30.41 |
| PGSC0003DMT400052757 | Potato | cytosol | 43.48 | 30.37 |
| CDX85725 | Canola | cytosol | 44.82 | 30.32 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 43.14 | 30.14 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 43.14 | 30.14 |
| CDX70383 | Canola | cytosol | 44.82 | 29.98 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 42.81 | 29.63 |
| Os01t0549700-01 | Rice | cytosol, plastid | 42.81 | 29.63 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 43.14 | 29.59 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 44.15 | 28.88 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 44.48 | 28.73 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 44.82 | 28.57 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.7 | 28.26 |
| CDY26130 | Canola | cytosol | 9.36 | 27.72 |
| CDX69778 | Canola | cytosol | 45.48 | 27.47 |
| AT5G11200.2 | Thale cress | cytosol | 44.48 | 27.37 |
| CDX85726 | Canola | cytosol | 44.82 | 27.35 |
| Solyc08g061000.2.1 | Tomato | nucleus | 44.15 | 27.22 |
| Zm00001d009761_P004 | Maize | cytosol | 44.15 | 26.99 |
| CDX78412 | Canola | cytosol | 44.82 | 26.96 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 43.81 | 26.31 |
| CDY22577 | Canola | cytosol | 13.04 | 26.17 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 45.15 | 25.81 |
| CDY45702 | Canola | cytosol | 16.72 | 24.27 |
| Zm00001d011150_P005 | Maize | cytosol | 28.76 | 18.57 |
| CDY54061 | Canola | cytosol | 18.39 | 16.87 |
| CDY24057 | Canola | cytosol | 20.74 | 15.05 |
| CDY33073 | Canola | cytosol | 20.74 | 15.05 |
| CDY39079 | Canola | cytosol | 20.74 | 15.05 |
| CDY08220 | Canola | cytosol | 20.74 | 15.05 |
| CDY10607 | Canola | cytosol | 20.4 | 14.84 |
| CDY32586 | Canola | cytosol | 18.73 | 14.81 |
| CDY02469 | Canola | cytosol | 20.4 | 14.81 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 20.74 | 14.52 |
| CDY24617 | Canola | cytosol | 19.73 | 14.46 |
| CDY22956 | Canola | cytosol | 19.73 | 14.46 |
| CDX82280 | Canola | cytosol | 19.73 | 14.46 |
| CDY33416 | Canola | cytosol | 19.73 | 14.46 |
| CDY51692 | Canola | cytosol | 19.73 | 14.46 |
| CDY42205 | Canola | cytosol | 19.73 | 14.46 |
| CDY55205 | Canola | cytosol | 20.4 | 14.42 |
| CDX97528 | Canola | cytosol | 20.4 | 14.35 |
| CDY58787 | Canola | cytosol | 23.08 | 14.32 |
| CDY07205 | Canola | cytosol | 23.41 | 14.26 |
| CDX71756 | Canola | cytosol | 22.74 | 14.2 |
| CDY51147 | Canola | cytosol | 23.41 | 14.11 |
| CDY58940 | Canola | cytosol | 19.06 | 14.11 |
| CDY48935 | Canola | cytosol, plastid | 22.41 | 14.11 |
| CDX82505 | Canola | cytosol | 20.07 | 14.02 |
| CDX75739 | Canola | cytosol | 20.4 | 13.99 |
| CDX91901 | Canola | cytosol | 23.41 | 13.97 |
| CDY27357 | Canola | cytosol, plastid | 23.75 | 13.95 |
| CDY37067 | Canola | cytosol | 23.75 | 13.92 |
| CDY03623 | Canola | cytosol | 18.73 | 13.86 |
| CDX74342 | Canola | cytosol | 23.41 | 13.62 |
| CDX67556 | Canola | cytosol | 19.73 | 12.5 |
| CDX95397 | Canola | cytosol | 20.4 | 12.35 |
| CDX76225 | Canola | cytosol | 20.4 | 12.3 |
| CDY13319 | Canola | cytosol | 19.73 | 12.04 |
| CDY72259 | Canola | cytosol | 7.02 | 9.46 |
| CDY02574 | Canola | plastid | 14.72 | 9.21 |
| CDY47205 | Canola | plastid | 14.72 | 9.21 |
| CDY54037 | Canola | cytosol | 8.03 | 8.99 |
| CDY67069 | Canola | cytosol | 3.01 | 8.91 |
| CDY53867 | Canola | cytosol | 12.37 | 8.77 |
| CDX72939 | Canola | mitochondrion, nucleus | 11.37 | 7.3 |
| CDY11154 | Canola | cytosol | 4.68 | 6.93 |
| CDY49860 | Canola | cytosol | 2.01 | 4.8 |
| CDY68148 | Canola | nucleus | 11.71 | 4.74 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078GF87 | UniProt:A0A078GF87 |
| EnsemblPlants:CDY23782 | ProteinID:CDY23782 | ProteinID:CDY23782.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0043169 |
| EnsemblPlantsGene:GSBRNA2T00024143001 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase | PFAM:PF00271 | InterPro:PP2C_BS |
| ScanProsite:PS01032 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | SMART:SM00490 | SUPFAM:SSF52540 |
| SignalP:SignalP-noTM | UniParc:UPI0004EE0BF0 | SEG:seg | : | : | : |
Description
BnaC04g43400DBnaC04g43400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF87]
Coordinates
chrLK032148:-:524952..526905
Molecular Weight (calculated)
34304.0 Da
IEP (calculated)
9.578
GRAVY (calculated)
-0.044
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFCLNLINY LFLILCFSKY SLFCSSSNLD QFIFSLDLRR TKGKGAPIVI TPSSVAVPRR LELLISGENR WVSRLRYRRL VESSGRWFLL NRLLLTSPEQ
101: LNPKSIVLSE KSKFGLFCVC DGHGGAGAEN RSLDDHQYEM EKNRKLNDLL DALDFNQVVI FVKSVSRAGE LNKLLIECNF PSICIHSGMS QEERFEGHKR
201: ILVATDLVGR GIAIERVNIV INYDMPDSAD TYLHRLGERV GLEQRVLRSH LWHQLQILKF LISDGLWDVV SPKKAVQLVL QVKKKIYFKW KQHGCTALS
101: LNPKSIVLSE KSKFGLFCVC DGHGGAGAEN RSLDDHQYEM EKNRKLNDLL DALDFNQVVI FVKSVSRAGE LNKLLIECNF PSICIHSGMS QEERFEGHKR
201: ILVATDLVGR GIAIERVNIV INYDMPDSAD TYLHRLGERV GLEQRVLRSH LWHQLQILKF LISDGLWDVV SPKKAVQLVL QVKKKIYFKW KQHGCTALS
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.