Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49860 | Canola | cytosol | 29.15 | 98.4 |
| CDY67069 | Canola | cytosol | 22.04 | 92.08 |
| CDY11154 | Canola | cytosol | 43.36 | 90.59 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 24.17 | 82.93 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 16.35 | 82.14 |
| CDX72939 | Canola | mitochondrion, nucleus | 89.81 | 81.33 |
| CDY72259 | Canola | cytosol | 41.71 | 79.28 |
| CDY54037 | Canola | cytosol | 45.73 | 72.28 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 71.56 | 70.73 |
| CDY02469 | Canola | cytosol | 64.22 | 65.78 |
| CDY10607 | Canola | cytosol | 63.98 | 65.69 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 64.22 | 65.62 |
| CDY08220 | Canola | cytosol | 63.98 | 65.53 |
| CDY39079 | Canola | cytosol | 63.74 | 65.29 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 63.51 | 64.89 |
| CDY55205 | Canola | cytosol | 64.45 | 64.3 |
| Solyc07g040750.1.1 | Tomato | cytosol | 62.8 | 64.16 |
| CDY24057 | Canola | cytosol | 62.56 | 64.08 |
| CDX97528 | Canola | cytosol | 64.22 | 63.76 |
| CDY33073 | Canola | cytosol | 61.85 | 63.35 |
| CDX82505 | Canola | cytosol | 63.51 | 62.62 |
| CDX75739 | Canola | cytosol | 63.98 | 61.93 |
| CDY32586 | Canola | cytosol | 55.45 | 61.9 |
| CDY68148 | Canola | nucleus | 90.28 | 51.56 |
| CDY22956 | Canola | cytosol | 41.47 | 42.89 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 31.04 | 42.67 |
| CDY33416 | Canola | cytosol | 41.23 | 42.65 |
| CDY51692 | Canola | cytosol | 41.23 | 42.65 |
| CDY24617 | Canola | cytosol | 41.23 | 42.65 |
| CDX82280 | Canola | cytosol | 41.23 | 42.65 |
| CDY42205 | Canola | cytosol | 41.0 | 42.4 |
| CDY58940 | Canola | cytosol | 37.91 | 39.6 |
| CDY03623 | Canola | cytosol | 37.91 | 39.6 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 38.39 | 38.48 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 40.05 | 30.73 |
| CDY54061 | Canola | cytosol | 22.04 | 28.53 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 39.81 | 26.25 |
| CDX85725 | Canola | cytosol | 27.01 | 25.79 |
| CDY51112 | Canola | cytosol | 26.78 | 25.68 |
| CDX70383 | Canola | cytosol | 27.01 | 25.5 |
| CDY22577 | Canola | cytosol | 8.77 | 24.83 |
| CDY48935 | Canola | cytosol, plastid | 26.54 | 23.58 |
| CDY71952 | Canola | cytosol | 23.22 | 23.5 |
| CDX71756 | Canola | cytosol | 26.54 | 23.38 |
| CDY58787 | Canola | cytosol | 26.3 | 23.03 |
| CDX78412 | Canola | cytosol | 27.01 | 22.94 |
| CDX85726 | Canola | cytosol | 26.54 | 22.86 |
| CDX69778 | Canola | cytosol | 26.78 | 22.83 |
| CDY07205 | Canola | cytosol | 26.54 | 22.81 |
| CDY51147 | Canola | cytosol | 26.78 | 22.78 |
| CDX91901 | Canola | cytosol | 26.3 | 22.16 |
| CDY37067 | Canola | cytosol | 26.54 | 21.96 |
| CDY27357 | Canola | cytosol, plastid | 26.3 | 21.81 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 26.78 | 21.61 |
| CDX74342 | Canola | cytosol | 26.07 | 21.4 |
| CDX67556 | Canola | cytosol | 23.46 | 20.97 |
| CDX76225 | Canola | cytosol | 23.93 | 20.36 |
| CDX95397 | Canola | cytosol | 23.7 | 20.24 |
| CDY13319 | Canola | cytosol | 23.46 | 20.2 |
| OQU84655 | Sorghum | cytosol | 36.02 | 19.87 |
| Os02t0221300-01 | Rice | cytosol | 37.91 | 18.16 |
| CDY45702 | Canola | cytosol | 8.53 | 17.48 |
| KXG29825 | Sorghum | cytosol | 35.07 | 16.78 |
| Zm00001d016351_P002 | Maize | nucleus | 34.83 | 16.48 |
| CDY02574 | Canola | plastid | 18.01 | 15.9 |
| CDY47205 | Canola | plastid | 17.77 | 15.69 |
| Zm00001d016350_P001 | Maize | vacuole | 18.72 | 15.67 |
| CDY37498 | Canola | cytosol, mitochondrion | 3.32 | 15.22 |
| CDY51111 | Canola | cytosol | 8.29 | 14.06 |
| CDY26130 | Canola | cytosol | 3.32 | 13.86 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 40.76 | 13.5 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 41.0 | 12.87 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 40.05 | 12.66 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 8.77 | 12.37 |
| CDY56825 | Canola | cytosol | 6.4 | 11.84 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IV54 | UniProt:A0A078IV54 | EnsemblPlants:CDY53867 | ProteinID:CDY53867 |
| ProteinID:CDY53867.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF3511 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00011618001 |
| InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF12023 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0004EEF934 | SEG:seg | : |
Description
BnaC02g46260DBnaC02g46260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV54]
Coordinates
chrLK033245:-:41795..45276
Molecular Weight (calculated)
47256.9 Da
IEP (calculated)
8.114
GRAVY (calculated)
-0.324
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMASEGTQ YDPRQFDSKM NAILGEEGEE TFYTTYDEVC DSFDAMELKS DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDYTLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILQSGV HVVVGTPGRV FDMLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFTQLL EVVASEDMLK
301: SKSCREEMRS SSIAYKYHCL TNGGTPEAVA APSPTNPQLP VMLRSYSTST YSPHKNPTTV RDNPNSKSNG KVKKGLKEAE IQRKKRVAAY NVYGVEGKVK
401: GSIRKNFKWF KETCSNAVNG LW
101: QQLDYTLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILQSGV HVVVGTPGRV FDMLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFTQLL EVVASEDMLK
301: SKSCREEMRS SSIAYKYHCL TNGGTPEAVA APSPTNPQLP VMLRSYSTST YSPHKNPTTV RDNPNSKSNG KVKKGLKEAE IQRKKRVAAY NVYGVEGKVK
401: GSIRKNFKWF KETCSNAVNG LW
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.