Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003442.1-P | Field mustard | cytosol | 97.72 | 98.74 |
| CDY45702 | Canola | cytosol | 41.49 | 97.09 |
| CDX71756 | Canola | cytosol | 92.95 | 93.53 |
| CDY48935 | Canola | cytosol, plastid | 91.29 | 92.63 |
| AT3G61240.1 | Thale cress | cytosol | 92.74 | 89.76 |
| KRH04755 | Soybean | cytosol | 47.72 | 86.79 |
| CDY54061 | Canola | cytosol | 55.81 | 82.52 |
| CDY37067 | Canola | cytosol | 85.27 | 80.59 |
| CDY27357 | Canola | cytosol, plastid | 84.23 | 79.76 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 56.22 | 79.71 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 78.42 | 78.75 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 79.25 | 77.64 |
| CDY07205 | Canola | cytosol | 78.63 | 77.19 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 77.8 | 77.16 |
| CDY51147 | Canola | cytosol | 79.25 | 77.02 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 78.42 | 76.99 |
| Solyc10g017530.2.1 | Tomato | nucleus | 77.8 | 76.37 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 79.25 | 76.1 |
| CDX91901 | Canola | cytosol | 79.05 | 76.05 |
| KRH48170 | Soybean | endoplasmic reticulum | 79.25 | 75.94 |
| KRH48173 | Soybean | mitochondrion | 78.63 | 75.8 |
| KRH65096 | Soybean | nucleus | 78.42 | 75.75 |
| Solyc01g094350.2.1 | Tomato | nucleus | 77.59 | 75.1 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 76.56 | 75.0 |
| Os04t0533000-02 | Rice | cytosol | 77.18 | 74.7 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 77.18 | 74.55 |
| CDX74342 | Canola | cytosol | 79.25 | 74.32 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 77.18 | 74.25 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 77.8 | 73.82 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 76.97 | 73.03 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 76.14 | 72.96 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 78.01 | 72.59 |
| EER91410 | Sorghum | cytosol | 76.35 | 72.58 |
| EER91411 | Sorghum | cytosol | 75.93 | 72.19 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 78.01 | 71.89 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 77.8 | 71.7 |
| Zm00001d051268_P004 | Maize | extracellular | 77.59 | 71.65 |
| Os10t0503700-01 | Rice | plasma membrane | 77.39 | 71.59 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 77.59 | 71.51 |
| Zm00001d017384_P008 | Maize | cytosol | 77.39 | 71.05 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 75.73 | 69.52 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 75.52 | 69.33 |
| KRH40488 | Soybean | cytosol | 77.18 | 69.02 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 75.31 | 69.01 |
| GSMUA_Achr11P... | Banana | cytosol | 77.8 | 66.37 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 75.52 | 64.54 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 70.95 | 63.69 |
| CDY26130 | Canola | cytosol | 9.13 | 43.56 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.3 | 43.48 |
| CDY67069 | Canola | cytosol | 8.09 | 38.61 |
| CDY10607 | Canola | cytosol | 31.33 | 36.74 |
| CDY32586 | Canola | cytosol | 28.63 | 36.51 |
| CDY39079 | Canola | cytosol | 31.12 | 36.41 |
| CDY02469 | Canola | cytosol | 31.12 | 36.41 |
| CDY08220 | Canola | cytosol | 31.12 | 36.41 |
| CDY24057 | Canola | cytosol | 30.91 | 36.16 |
| CDX97528 | Canola | cytosol | 31.33 | 35.53 |
| CDY55205 | Canola | cytosol | 31.12 | 35.46 |
| CDY33073 | Canola | cytosol | 30.29 | 35.44 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.33 | 35.36 |
| CDX82505 | Canola | cytosol | 31.12 | 35.05 |
| CDX75739 | Canola | cytosol | 31.12 | 34.4 |
| CDY42205 | Canola | cytosol | 29.05 | 34.31 |
| CDX82280 | Canola | cytosol | 29.05 | 34.31 |
| CDY51692 | Canola | cytosol | 29.05 | 34.31 |
| CDY22956 | Canola | cytosol | 29.05 | 34.31 |
| CDY33416 | Canola | cytosol | 29.05 | 34.31 |
| CDY22577 | Canola | cytosol | 10.58 | 34.23 |
| CDY24617 | Canola | cytosol | 28.84 | 34.07 |
| CDY72259 | Canola | cytosol | 15.56 | 33.78 |
| CDY51112 | Canola | cytosol | 29.88 | 32.73 |
| CDX85725 | Canola | cytosol | 29.88 | 32.58 |
| CDY58940 | Canola | cytosol | 27.18 | 32.43 |
| CDY03623 | Canola | cytosol | 26.97 | 32.18 |
| CDX70383 | Canola | cytosol | 29.67 | 31.99 |
| CDY11154 | Canola | cytosol | 13.28 | 31.68 |
| CDY71952 | Canola | cytosol | 26.35 | 30.46 |
| CDY51111 | Canola | cytosol | 15.15 | 29.32 |
| CDX85726 | Canola | cytosol | 29.46 | 28.98 |
| CDY56825 | Canola | cytosol | 13.69 | 28.95 |
| CDX69778 | Canola | cytosol | 29.67 | 28.89 |
| CDX78412 | Canola | cytosol | 29.67 | 28.77 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 29.67 | 27.34 |
| CDX67556 | Canola | cytosol | 26.35 | 26.91 |
| CDX76225 | Canola | cytosol | 27.39 | 26.61 |
| CDY54037 | Canola | cytosol | 14.73 | 26.59 |
| CDX95397 | Canola | cytosol | 27.18 | 26.52 |
| CDY53867 | Canola | cytosol | 23.03 | 26.3 |
| CDY13319 | Canola | cytosol | 26.56 | 26.12 |
| CDX72939 | Canola | mitochondrion, nucleus | 23.44 | 24.25 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.32 | 23.08 |
| CDY47205 | Canola | plastid | 21.16 | 21.34 |
| CDY02574 | Canola | plastid | 21.16 | 21.34 |
| CDY68148 | Canola | nucleus | 23.65 | 15.43 |
| CDY49860 | Canola | cytosol | 1.45 | 5.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078J4A1 | UniProt:A0A078J4A1 | EnsemblPlants:CDY58787 | ProteinID:CDY58787 |
| ProteinID:CDY58787.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00025140001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF555 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EEFFF8 | SEG:seg | : | : | : | : |
Description
BnaA07g38020DBnaA07g38020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4A1]
Coordinates
chrLK033699:+:3587..5979
Molecular Weight (calculated)
54568.7 Da
IEP (calculated)
8.460
GRAVY (calculated)
-0.403
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNRGRYPP GNGTGRGAPP HPDYQPYGQQ PQNHQQFQQQ QQWRRAQLPG NANEVQNTTS SQPPVPSNDH KFSGSVTLSG GQDWKATLKL PPPDTRYQTA
101: DVTATKGNEF EDYFLKRDLL KGIYEKGFEK PSPIQEESIP IALTGSDILA RAKNGTGKTG AFCIPLLEKI DPNTNVIQAM ILVPTRELAL QTSQVCKELS
201: KYLNIQVMVT TGGTSLRDDI MRLHQPVHLL VGTPGRILDL TKKGVCVLKD CTMLVMDEAD KLLSAEFQPS LEELIQFLPE NRQLLMFSAT FPVTVKAFKD
301: RHLRKPYVIN LMDQLTLMGV TQYYAFVEER QKVHCLNTLF SKLQINQSII FCNSVNRVEL LAKKITELGY SCFYIHAKMV QDHRNRVFHE FRNGACRNLV
401: CTDLFTRGID IQAVNVVINF DFPRTSESYL HRVGRSGRFG HLGLAVNLVT YEDRFKMCQT EQELGTEIKP IPSQIDQAIY CQ
101: DVTATKGNEF EDYFLKRDLL KGIYEKGFEK PSPIQEESIP IALTGSDILA RAKNGTGKTG AFCIPLLEKI DPNTNVIQAM ILVPTRELAL QTSQVCKELS
201: KYLNIQVMVT TGGTSLRDDI MRLHQPVHLL VGTPGRILDL TKKGVCVLKD CTMLVMDEAD KLLSAEFQPS LEELIQFLPE NRQLLMFSAT FPVTVKAFKD
301: RHLRKPYVIN LMDQLTLMGV TQYYAFVEER QKVHCLNTLF SKLQINQSII FCNSVNRVEL LAKKITELGY SCFYIHAKMV QDHRNRVFHE FRNGACRNLV
401: CTDLFTRGID IQAVNVVINF DFPRTSESYL HRVGRSGRFG HLGLAVNLVT YEDRFKMCQT EQELGTEIKP IPSQIDQAIY CQ
001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
Arabidopsis Description
RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.