CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69778	Canola	cytosol	93.12	98.38
AT5G11170.1	Thale cress	cytosol	79.54	97.42
CDX70383	Canola	cytosol	81.84	95.75
CDY51112	Canola	cytosol	80.31	95.45
CDX85725	Canola	cytosol	80.31	95.02
PGSC0003DMT400052757	Potato	cytosol	75.14	91.82
PGSC0003DMT400053566	Potato	cytosol	74.95	91.8
CDY71952	Canola	cytosol	72.66	91.13
VIT_09s0002g06660.t01	Wine grape	cytosol	74.57	91.12
CDX85726	Canola	cytosol	85.09	90.82
Solyc06g066060.2.1	Tomato	nucleus	70.55	90.0
CDX78412	Canola	cytosol	85.47	89.94
AT5G11200.2	Thale cress	cytosol	83.56	89.92
KRH47464	Soybean	nucleus	72.28	88.73
KRH44441	Soybean	cytosol, nucleus	72.28	88.73
KXG22711	Sorghum	cytosol	72.66	88.58
KXG32708	Sorghum	cytosol	72.47	88.55
TraesCS3B01G224400.1	Wheat	cytosol	72.08	88.08
TraesCS1B01G477500.1	Wheat	cytosol	72.47	87.94
TraesCS3D01G204400.1	Wheat	cytosol	71.89	87.85
TraesCS1A01G443400.1	Wheat	cytosol	72.47	87.33
TraesCS1D01G451300.1	Wheat	cytosol	70.55	87.23
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	71.89	87.04
Os01t0549700-01	Rice	cytosol, plastid	71.7	86.81
TraesCS3A01G200100.1	Wheat	cytosol	71.51	85.78
Bra008983.1-P	Field mustard	cytosol	77.25	85.59
VIT_04s0008g05330.t01	Wine grape	cytosol	74.76	85.56
GSMUA_Achr8P05380_001	Banana	cytosol	75.72	85.53
CDY51111	Canola	cytosol	39.2	82.33
Solyc08g061000.2.1	Tomato	nucleus	74.95	80.82
Zm00001d009761_P004	Maize	cytosol	74.19	79.35
HORVU1Hr1G095100.5	Barley	cytosol	71.13	79.32
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	67.3	70.68
Zm00001d011149_P002	Maize	cytosol	20.65	65.06
Zm00001d011150_P005	Maize	cytosol	56.02	63.28
CDY56825	Canola	cytosol	26.58	60.96
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	25.81	45.15
CDY37498	Canola	cytosol, mitochondrion	7.65	43.48
CDY26130	Canola	cytosol	8.03	41.58
CDY67069	Canola	cytosol	7.46	38.61
CDY45702	Canola	cytosol	14.53	36.89
CDY33073	Canola	cytosol	28.3	35.92
CDY24057	Canola	cytosol	28.3	35.92
CDY39079	Canola	cytosol	28.3	35.92
CDY08220	Canola	cytosol	28.11	35.68
CDY54061	Canola	cytosol	22.18	35.58
CDY32586	Canola	cytosol	25.62	35.45
CDY02469	Canola	cytosol	27.92	35.44
CDY10607	Canola	cytosol	27.72	35.28
CDY72259	Canola	cytosol	14.72	34.68
CDY55205	Canola	cytosol	27.53	34.04
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.72	33.96
CDX97528	Canola	cytosol	27.53	33.88
CDY22956	Canola	cytosol	26.2	33.58
CDX82280	Canola	cytosol	26.2	33.58
CDY22577	Canola	cytosol	9.56	33.56
CDX82505	Canola	cytosol	27.34	33.41
CDY24617	Canola	cytosol	26.0	33.33
CDY33416	Canola	cytosol	26.0	33.33
CDY42205	Canola	cytosol	26.0	33.33
CDY51692	Canola	cytosol	26.0	33.33
CDX75739	Canola	cytosol	27.53	33.03
CDY58940	Canola	cytosol	25.05	32.43
CDY03623	Canola	cytosol	24.86	32.18
CDY07205	Canola	cytosol	27.92	29.74
CDY11154	Canola	cytosol	11.47	29.7
CDY48935	Canola	cytosol, plastid	26.96	29.68
CDY58787	Canola	cytosol	27.34	29.67
CDX71756	Canola	cytosol	26.96	29.44
CDY51147	Canola	cytosol	27.92	29.44
CDX91901	Canola	cytosol	27.72	28.94
CDY54037	Canola	cytosol	14.34	28.09
CDY37067	Canola	cytosol	27.34	28.04
CDX74342	Canola	cytosol	27.53	28.02
CDY27357	Canola	cytosol, plastid	27.15	27.9
CDX67556	Canola	cytosol	24.67	27.33
CDX95397	Canola	cytosol	25.43	26.92
CDX76225	Canola	cytosol	25.43	26.81
CDY53867	Canola	cytosol	21.61	26.78
CDY13319	Canola	cytosol	24.86	26.53
CDX72939	Canola	mitochondrion, nucleus	21.41	24.03
CDY47205	Canola	plastid	17.59	19.25
CDY02574	Canola	plastid	17.59	19.25
CDY68148	Canola	nucleus	21.61	15.29
CDY49860	Canola	cytosol	2.1	8.8

Protein Annotations

MapMan:16.11.1.3	Gene3D:3.40.50.300	GO:A0A078BZF6	EnsemblPlants:CDX69777	ProteinID:CDX69777	ProteinID:CDX69777.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00135824001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EE2DA4	SEG:seg	:	:	:

Description

BnaA10g21260D

Coordinates

chrLK031790:-:1807682..1811170

Molecular Weight (calculated)

59088.4 Da

IEP (calculated)

5.379

GRAVY (calculated)

-0.104

Length

523 amino acids

Sequence
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVLDSGNK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKFISLLAL FLSLHLDFFV PTTYIIAMLQ
101: HECIPQAILG MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALILCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NNKIHKDLLK NECPHIVVGT
201: PGRVLGLARD KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDDSENWEP MKVSLSFGVA LGTLERFSDV
301: FAQWDHISPL CVFFLLMALM FRAILVFEDA KPGGRGSLFR GSPMEIYVDD EAKLTLHGLV QHYIKLSEME KNRKLNDLLD ALDFNQVVIF VKSVSRAGEL
401: NKLLIECNFP SICIHSGMSQ EERLTHYKSF KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS ASDSEVLNQV
501: QDRFEVDIKE LPEQIDTSTY MPS

Best Arabidopsis Sequence Match ( AT5G11200.2 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.