CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47205	Canola	plastid	97.49	97.49
Bra023712.1-P	Field mustard	plastid	96.86	96.86
AT5G19210.2	Thale cress	plastid	86.4	87.5
KRH02098	Soybean	cytosol	33.26	69.13
PGSC0003DMT400023224	Potato	nucleus	46.23	68.85
KRH51049	Soybean	plastid	64.64	65.47
VIT_05s0020g02870.t01	Wine grape	extracellular	66.11	65.02
Solyc01g079800.2.1	Tomato	plastid	60.46	62.96
KXG34209	Sorghum	plastid	57.95	62.53
Zm00001d011790_P001	Maize	plastid	57.32	61.3
TraesCS3B01G592900.1	Wheat	plastid	56.49	60.27
TraesCS3D01G530600.1	Wheat	plastid	56.28	59.91
Os01t0970600-01	Rice	plastid	59.2	59.7
GSMUA_Achr6P27990_001	Banana	plastid	59.0	58.14
HORVU3Hr1G114220.3	Barley	plastid	56.28	54.34
CDY26130	Canola	cytosol	7.32	34.65
CDY37498	Canola	cytosol, mitochondrion	6.49	33.7
CDY67069	Canola	cytosol	7.11	33.66
CDY72259	Canola	cytosol	13.39	28.83
CDY54061	Canola	cytosol	18.62	27.3
CDY10607	Canola	cytosol	23.22	27.01
CDY08220	Canola	cytosol	23.22	26.94
CDY02469	Canola	cytosol	23.01	26.7
CDY39079	Canola	cytosol	22.8	26.46
CDY11154	Canola	cytosol	11.09	26.24
CDY33073	Canola	cytosol	22.18	25.73
CDY24057	Canola	cytosol	22.18	25.73
CDY32586	Canola	cytosol	20.29	25.66
CDY55205	Canola	cytosol	22.59	25.53
CDX82505	Canola	cytosol	22.8	25.47
CDX97528	Canola	cytosol	22.59	25.41
CDY45702	Canola	cytosol	10.88	25.24
CDX75739	Canola	cytosol	23.01	25.23
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.38	25.06
CDX82280	Canola	cytosol	20.71	24.26
CDY24617	Canola	cytosol	20.71	24.26
CDY33416	Canola	cytosol	20.71	24.26
CDY42205	Canola	cytosol	20.71	24.26
CDY51692	Canola	cytosol	20.5	24.02
CDY22956	Canola	cytosol	20.5	24.02
CDY03623	Canola	cytosol	18.83	22.28
CDY58940	Canola	cytosol	18.83	22.28
CDY48935	Canola	cytosol, plastid	21.55	21.68
CDY07205	Canola	cytosol	22.18	21.59
CDY51147	Canola	cytosol	22.18	21.37
CDY58787	Canola	cytosol	21.34	21.16
CDX71756	Canola	cytosol	21.13	21.09
CDY22577	Canola	cytosol	6.49	20.81
CDX91901	Canola	cytosol	21.76	20.76
CDY51112	Canola	cytosol	19.04	20.68
CDX85725	Canola	cytosol	19.04	20.59
CDX70383	Canola	cytosol	19.25	20.58
CDY71952	Canola	cytosol	17.78	20.38
CDX74342	Canola	cytosol	21.76	20.23
CDY27357	Canola	cytosol, plastid	21.34	20.04
CDY37067	Canola	cytosol	21.13	19.8
CDX67556	Canola	cytosol	18.83	19.07
CDY56825	Canola	cytosol	9.0	18.86
CDX85726	Canola	cytosol	19.25	18.78
CDX78412	Canola	cytosol	19.25	18.51
CDX69778	Canola	cytosol	19.04	18.38
CDY13319	Canola	cytosol	18.83	18.37
CDY53867	Canola	cytosol	15.9	18.01
CDY54037	Canola	cytosol	9.83	17.6
CDX69777	Canola	cytosol, nucleus, plasma membrane	19.25	17.59
CDX95397	Canola	cytosol	17.78	17.21
CDX76225	Canola	cytosol	17.78	17.14
CDY51111	Canola	cytosol	8.79	16.87
CDX72939	Canola	mitochondrion, nucleus	15.48	15.88
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	9.21	14.72
CDY68148	Canola	nucleus	15.69	10.15
CDY49860	Canola	cytosol	1.46	5.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078EPK4	EnsemblPlants:CDY02574	ProteinID:CDY02574	ProteinID:CDY02574.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00114673001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EE5F3C	SEG:seg	:

Description

BnaC02g08610D

Coordinates

chrLK031936:-:65936..68031

Molecular Weight (calculated)

53063.6 Da

IEP (calculated)

8.196

GRAVY (calculated)

0.018

Length

478 amino acids

Sequence
(BLAST)

001: MASHQLLSVP HFCLLSKVSS FHAPLLSTPG KLSLFHPTTC SPLQSSSTSR ITNLQAVTNT RSEIESNAPT ETTALTLRNI CQGFVPEHIL HRQALMEEIG
101: FVFPTDIQRE ALPTLFTGRD CILHAQTGSG KTLTYLLLIL SLINPQRSSV QAVVVVPTRE LGMQVTKVAR MLAAKSTDAE VKGCTVMALL DGGMLRRHKS
201: WLKAEPPAIV VATVASLCHM LEKHILRLDS VKVLVVDEVD FLFYSSKQAG PVRKLLTSFS SCDKRQTVFA SASIPQHKHF VHDCMQQKWT KRDVVHIHVS
301: AITPMPLCLL HKFVVCGKKN KHQVLLALLE SDAPESAIIF VGEQSEKSKK AGNDPSTTLL IEFLKTSYNG SLEILLLEED MNFNSRAASL TEIRQGGGFL
401: LVSTDIAARG IDLPETTHIF NFDLPQTATD YLHRAGRAGR KPFSDRKCIV TNLITSEERF VLQRFENELM FSCEELMF

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.