Factsheet for PGSC0003DMT400075336

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	95.85	99.75
PGSC0003DMT400021166	Potato	cytosol	99.27	98.55
PGSC0003DMT400075339	Potato	cytosol	99.02	98.31
PGSC0003DMT400088289	Potato	cytosol	95.12	94.2
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	94.88	94.19
KRH52210	Soybean	cytosol, endoplasmic reticulum	94.39	93.7
Bra027387.1-P	Field mustard	cytosol	94.15	93.69
CDY39079	Canola	cytosol	93.9	93.45
CDY08220	Canola	cytosol	93.9	93.45
Bra014365.1-P	Field mustard	cytosol	93.66	93.2
Bra021517.1-P	Field mustard	cytosol	93.66	93.2
CDY02469	Canola	cytosol	93.41	92.96
Bra030893.1-P	Field mustard	cytosol	93.41	92.96
CDY10607	Canola	cytosol	93.17	92.94
Bra001530.1-P	Field mustard	cytosol	94.15	92.79
AT1G54270.1	Thale cress	cytosol	92.93	92.48
PGSC0003DMT400012518	Potato	cytosol	92.68	92.01
Bra037977.1-P	Field mustard	cytosol	89.51	89.08
CDY24057	Canola	cytosol	89.51	89.08
Bra029124.1-P	Field mustard	cytosol	89.02	89.02
CDY32586	Canola	cytosol	81.95	88.89
CDY33073	Canola	cytosol	89.02	88.59
CDY55205	Canola	cytosol	90.49	87.71
AT3G13920.5	Thale cress	cytosol	89.27	87.35
CDX97528	Canola	cytosol	90.49	87.29
CDX82505	Canola	cytosol	89.76	85.98
CDX75739	Canola	cytosol	90.0	84.63
CDY72259	Canola	cytosol	44.88	82.88
PGSC0003DMT400019783	Potato	cytosol	60.98	61.12
TraesCS6B01G217800.1	Wheat	cytosol	56.59	55.11
GSMUA_Achr9P13950_001	Banana	mitochondrion	37.32	49.84
TraesCS6A01G186600.1	Wheat	cytosol	58.05	43.27
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	56.34	36.09
PGSC0003DMT400052757	Potato	cytosol	35.85	34.35
PGSC0003DMT400053566	Potato	cytosol	35.37	33.96
OQU84655	Sorghum	cytosol	51.71	27.71
PGSC0003DMT400022137	Potato	nucleus	33.41	26.65
Os02t0221300-01	Rice	cytosol	56.34	26.22
Zm00001d016350_P001	Maize	vacuole	30.0	24.4
PGSC0003DMT400023224	Potato	nucleus	18.54	23.68
Zm00001d016351_P002	Maize	nucleus	49.02	22.53
KXG29825	Sorghum	cytosol	47.56	22.11
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	26.34	19.71
TraesCS6A01G186800.1	Wheat	cytosol	58.78	18.92
TraesCS6D01G173700.3	Wheat	cytosol	59.02	18.01
TraesCS6B01G217700.1	Wheat	cytosol	57.56	17.68

Protein Annotations

EntrezGene:102594403	MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1CUZ8
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG401029299	PGSC:PGSC0003DMG401029299	EnsemblPlants:PGSC0003DMT400075336
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002963245
RefSeq:XP_006342502.1	RefSeq:XP_015162067.1	:	:	:	:

Description

Eukaryotic initiation factor 4A-2 [Source:PGSC_GENE;Acc:PGSC0003DMG401029299]

Coordinates

chr12:-:57803863..57808774

Molecular Weight (calculated)

46593.2 Da

IEP (calculated)

5.524

GRAVY (calculated)

-0.231

Length

410 amino acids

Sequence
(BLAST)

001: MAAEGSQFDA RQFDAKMTEL LGTEQQEFFT SYDEVHDSFD AMGLQENLLR GIYAYGFEKP SAIQQRGIVP FCKGLDVIQQ AQSGTGKTAT FCSGILQQLD
101: YSLVECQALV LAPTRELAQQ IEKVMRALGD YLGVKVHACV GGTSVREDQR ILQSGVHVVV GTPGRVFDML RRQSLRPDHI KMFVLDEADE MLSRGFKDQI
201: YDIFQLLPPK IQVGVFSATM PPEALEITRK FMNKPVRILV KRDELTLEGI KQFYVNVDKE EWKLETLCDL YETLAITQSV IFVNTRRKVD WLTDKMRGRD
301: HTVSATHGDM DQNTRDIIMR EFRSGSSRVL ITTDLLARGI DVQQVSLVIN YDLPTQPENY LHRIGRSGRF GRKGVAINFV TKDDERMLFD IQKFYNVVVE
401: ELPANVADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.