Factsheet for Os03t0208800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0549700-01
Os01t0550000-01
Os01t0785700-01
Os01t0935700-02
Os02t0121300-01
Os02t0123100-01
Os02t0537700-01
Os02t0557200-01
Os02t0753800-01
Os03t0136900-01
Os03t0137800-01	nucleus
Os03t0146300-01
Os03t0710800-01
Os03t0815200-01
Os04t0442000-01
Os04t0484900-01
Os04t0608500-01
Os05t0301700-01
Os05t0432200-00
Os06t0221200-01
Os07t0492000-01
Os08t0224700-01
Os09t0133600-01
Os10t0471700-02	nucleus
Os10t0518200-01
Os10t0563700-01
Os11t0217300-01
Os11t0546900-01
Os11t0609600-01
Os12t0481100-01
Os12t0489300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Os04t0608500-01	AT1G04810.1	20706207
AT1G47220.1	Os08t0224700-01	AT1G04810.1	20706207
AT1G47220.1	Os11t0609600-01	AT1G22300.1	20706207
AT1G47220.1	Os02t0753800-01	AT1G35720.1	20706207
AT1G47220.1	Os06t0221200-01	AT1G35720.1	20706207
AT1G47220.1	Os02t0557200-01	AT1G59750.1	20706207
AT1G47220.1	Os04t0442000-01	AT1G59750.1	20706207
AT1G47220.1	Os05t0432200-00	AT1G75750.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27960.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27970.1	20706207
AT1G47220.1	Os03t0815200-01	AT2G44160.1	20706207
AT1G47220.1	Os02t0537700-01	AT3G11630.1	20706207
AT1G47220.1	Os01t0935700-02	AT3G27240.1	20706207
AT1G47220.1	Os05t0301700-01	AT3G27240.1	20706207
AT1G47220.1	Os02t0123100-01	AT3G48750.1	20706207
AT1G47220.1	Os07t0492000-01	AT4G09320.1	20706207
AT1G47220.1	Os10t0563700-01	AT4G09320.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G34870.1	20706207
AT1G47220.1	Os03t0136900-01	AT4G35830.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G38740.1	20706207
AT1G47220.1	Os01t0549700-01	AT5G11170.1	20706207
AT1G47220.1	Os01t0550000-01	AT5G11170.1	20706207
AT1G47220.1	Os03t0710800-01	AT5G38480.1	20706207
AT1G47220.1	Os11t0546900-01	AT5G38480.1	20706207
AT1G47220.1	Os10t0518200-01	AT5G53560.1	20706207
AT5G43080.1	Os01t0785700-01	AT1G55890.1	20706207
AT5G43080.1	Os11t0217300-01	AT2G05830.1	20706207
AT5G43080.1	Os03t0146300-01	AT2G27970.1	20706207
AT5G43080.1	Os03t0137800-01	AT2G32710.1	20018602
AT5G43080.1	Os10t0471700-02	AT2G32710.1	20018602
AT5G43080.1	Os12t0489300-01	AT3G04620.1	20706207
AT5G43080.1	Os02t0123100-01	AT3G48750.1	20706207
AT5G43080.1	Os09t0133600-01	AT4G04020.1	20706207
AT5G43080.1	Os12t0481100-01	AT4G16630.1	20706207
AT5G43080.1	Os04t0484900-01	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0208700-00	Rice	nucleus	30.23	29.34
TraesCS4D01G253200.1	Wheat	nucleus	15.87	25.82
TraesCS4B01G254000.1	Wheat	nucleus	23.68	25.0
TraesCS4D01G253900.1	Wheat	nucleus	23.43	24.47
TraesCS4A01G050700.1	Wheat	nucleus	23.17	24.21
Os05t0237100-01	Rice	extracellular	11.08	22.34
HORVU4Hr1G069310.3	Barley	nucleus	22.92	21.93
Os12t0581800-01	Rice	nucleus, plastid	19.9	20.52
TraesCS4B01G253100.1	Wheat	nucleus	17.38	20.23
EER95303	Sorghum	nucleus, plastid	19.14	19.95
TraesCS4A01G051300.1	Wheat	nucleus	16.88	19.53
PGSC0003DMT400030176	Potato	nucleus	16.62	18.54
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	16.88	18.36
Solyc12g088500.1.1	Tomato	nucleus	16.12	18.08
PGSC0003DMT400030222	Potato	nucleus	16.12	18.08
Solyc12g088520.1.1	Tomato	nucleus	16.12	18.03
Solyc12g088530.1.1	Tomato	nucleus	15.37	17.23
Solyc12g088470.1.1	Tomato	nucleus	15.62	17.22
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	12.34	17.13
PGSC0003DMT400055428	Potato	nucleus	15.62	16.85
KRH61369	Soybean	nucleus	13.85	16.82
Solyc04g078310.2.1	Tomato	nucleus	15.62	16.71
GSMUA_Achr2P21520_001	Banana	nucleus	15.11	16.67
KRH61371	Soybean	nucleus	14.61	16.62
KRH15427	Soybean	nucleus, plastid	14.86	16.21
KRH05614	Soybean	nucleus	14.86	16.08
CDY17037	Canola	nucleus, plastid	14.61	15.93
VIT_03s0091g00280.t01	Wine grape	nucleus	13.6	15.84
Bra040792.1-P	Field mustard	nucleus, plastid	14.36	15.66
CDY17091	Canola	nucleus	14.11	15.64
CDY06752	Canola	nucleus	11.08	15.44
CDY47595	Canola	nucleus, plastid	14.36	15.36
AT5G43080.1	Thale cress	nucleus	13.6	15.21
CDY66770	Canola	nucleus	13.85	15.19
Solyc10g049360.1.1	Tomato	nucleus	14.36	15.08
KRH61373	Soybean	nucleus, plastid	14.11	14.93
Bra040710.1-P	Field mustard	nucleus	13.85	14.82
Zm00001d048127_P001	Maize	plastid	17.88	14.82
KRH52055	Soybean	nucleus	13.35	14.8
KRH52056	Soybean	nucleus	7.81	14.69
KRH61375	Soybean	nucleus	12.09	14.68
CDY06757	Canola	nucleus, plastid	13.35	14.6
Bra040753.1-P	Field mustard	nucleus, plastid	13.35	14.6
CDY23653	Canola	nucleus	13.1	14.57
Bra032220.1-P	Field mustard	nucleus	13.1	14.57
CDY22369	Canola	nucleus	12.85	14.53
PGSC0003DMT400056625	Potato	nucleus	13.85	14.47
AT1G47230.2	Thale cress	nucleus, plastid	13.35	14.32
AT1G47220.1	Thale cress	nucleus	11.59	14.07
Bra033658.1-P	Field mustard	nucleus	12.59	14.04
AT1G47210.2	Thale cress	nucleus	13.1	13.98
CDY47596	Canola	nucleus	12.59	13.77
CDY17039	Canola	nucleus	12.59	13.77
Bra040793.1-P	Field mustard	nucleus	12.59	13.77
Os01t0233100-00	Rice	nucleus, plastid	15.11	12.22
Os12t0502300-01	Rice	nucleus, plastid	14.11	11.43
Os01t0233500-01	Rice	nucleus, plastid	14.61	11.42
Os12t0298950-00	Rice	nucleus	12.85	11.41
Os03t0607600-00	Rice	nucleus	17.13	11.18
Os01t0281200-01	Rice	nucleus	9.57	8.98
Os06t0726800-01	Rice	nucleus	9.32	8.83
Os04t0563700-01	Rice	mitochondrion	7.81	7.38
Os05t0493500-00	Rice	nucleus	8.56	6.98
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	5.29	5.3

Protein Annotations

Gene3D:1.10.472.10	MapMan:35.1	UniProt:A0A0P0VUI1	ProteinID:BAS82891.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0051301
EnsemblPlantsGene:Os03g0208800	EnsemblPlants:Os03t0208800-00	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF231	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TMHMM:TMhelix
UniParc:UPI00039397E3	SEG:seg	:	:	:	:

Description

Cyclin, C-terminal domain containing protein. (Os03t0208800-00)

Coordinates

chr3:+:5677791..5680026

Molecular Weight (calculated)

43676.0 Da

IEP (calculated)

5.529

GRAVY (calculated)

-0.127

Length

397 amino acids

Sequence
(BLAST)

001: MARPRTRSVA RMEATAAAAA AAEEEEAGNP DGAEGAAVVA VAPEAAAEGP NEPNAGEASR EPDAGQASRE PDVAGPSRQP GAAGPSREPG AAGGPRQPGA
101: AGGPWQLVPN AAGPAVAPYV EDIDRYLRSL EAEESRRPIV NYDQEIQGGH INMRGKLVNW MEELVYGFNL WDNILYLAVS YVDRFLSRNV VNRERLQLLG
201: TSALFVASKY EDRCHPSARF FSSITADTYT TQQVVAMEAN ILSFLNFQMG SPTVITFLRR FLFSCRGSNR PINIRLELMC IYLAELSLLD DYNIRFLPSI
301: VAAACLFVGK FTLNPNTRPW NLSVQRITGY KVSDIEDCIR SIHDLQAGRK WSNLRAIRSK YEDDAVRPDS SISFFLLVVL LYIPILIMFC SHLFVRA

Best Arabidopsis Sequence Match ( AT1G47210.2 )
(BLAST)

001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI

Arabidopsis Description

CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.