Factsheet for Os01t0785700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0593700-01
Os02t0708400-01
Os04t0476800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	Os02t0708400-01	AT3G27960.1	21798944
AT1G55890.1	Os02t0593700-01	AT4G24690.1	21798944
AT1G55890.1	Os04t0476800-01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G077400.1	Barley	cytosol	54.84	62.14
TraesCS3A01G324300.1	Wheat	plastid	60.14	60.42
TraesCS3B01G353300.1	Wheat	plastid	57.14	59.33
TraesCS3D01G317700.1	Wheat	plastid	62.9	57.84
TraesCS3A01G324200.1	Wheat	plastid	60.6	57.8
TraesCS3A01G324500.1	Wheat	plastid	61.75	56.66
TraesCS3B01G361800.1	Wheat	plastid	57.14	56.49
TraesCS3A01G331700.1	Wheat	plastid	55.07	55.97
HORVU3Hr1G077440.2	Barley	mitochondrion	63.13	55.8
Zm00001d012606_P001	Maize	mitochondrion	58.06	55.63
TraesCS3D01G325200.1	Wheat	plastid	55.99	54.12
EES01579	Sorghum	mitochondrion	53.23	53.85
TraesCS3B01G353500.1	Wheat	plastid	62.21	53.68
TraesCS3A01G331600.1	Wheat	plastid	56.68	53.59
EES01580	Sorghum	mitochondrion	54.15	53.53
TraesCS3D01G317800.1	Wheat	plastid	61.75	53.28
HORVU6Hr1G019320.1	Barley	plastid	55.99	52.37
EER95222	Sorghum	mitochondrion	55.99	49.29
GSMUA_Achr10P...	Banana	mitochondrion	42.63	46.13
VIT_00s0271g00040.t01	Wine grape	cytosol	18.43	39.22
VIT_00s0274g00040.t01	Wine grape	mitochondrion	33.87	38.48
VIT_00s0271g00080.t01	Wine grape	mitochondrion	31.57	37.74
VIT_00s0271g00070.t01	Wine grape	mitochondrion	32.26	36.94
VIT_00s0271g00050.t01	Wine grape	mitochondrion	19.12	36.56
Solyc03g031460.1.1	Tomato	plastid	31.34	35.88
PGSC0003DMT400012953	Potato	cytosol	31.11	35.62
CDY26081	Canola	mitochondrion	31.11	34.09
Bra037096.1-P	Field mustard	mitochondrion	31.11	34.01
CDY08267	Canola	mitochondrion	31.11	34.01
KRH41973	Soybean	nucleus	29.49	33.6
AT1G55890.1	Thale cress	mitochondrion	30.41	33.17
KRH49916	Soybean	cytosol	30.18	32.75
Bra039373.1-P	Field mustard	cytosol	20.51	32.48
AT3G13160.1	Thale cress	mitochondrion	29.26	32.23
PGSC0003DMT400055889	Potato	plastid	28.8	31.81
CDY24208	Canola	mitochondrion	28.8	31.73
CDY66550	Canola	mitochondrion	21.66	31.44
PGSC0003DMT400055888	Potato	mitochondrion	27.19	31.3
PGSC0003DMT400071165	Potato	extracellular	12.67	31.25
Solyc02g079830.1.1	Tomato	mitochondrion	28.8	31.25
CDY43367	Canola	mitochondrion	28.34	31.22
CDX82550	Canola	mitochondrion	27.65	30.53
Bra001492.1-P	Field mustard	mitochondrion	28.11	30.5
Solyc02g079820.2.1	Tomato	cytosol, plastid	20.74	28.75
Os01t0793200-01	Rice	mitochondrion	24.42	27.18
CDY24210	Canola	plastid	26.04	25.8
CDY43368	Canola	plastid	26.04	25.74
Os02t0829800-01	Rice	mitochondrion	24.19	24.82
Os08t0499800-01	Rice	mitochondrion	24.88	24.38
Os02t0633200-01	Rice	mitochondrion	24.88	23.74
Os10t0484900-00	Rice	mitochondrion	23.27	23.6
Bra039372.1-P	Field mustard	cytosol, plastid	25.58	23.22
AT3G13150.1	Thale cress	plastid	26.27	20.69
Os10t0485000-01	Rice	cytosol	14.75	5.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4327045	EMBL:AK100774	EMBL:AK102081	ProteinID:BAB92593.1
ProteinID:BAF06383.1	ProteinID:BAS74690.1	ProteinID:EAZ13784.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlantsGene:Os01g0785700	EnsemblPlants:Os01t0785700-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat	UniProt:Q8LQM2	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00000A6246	RefSeq:XP_015622164.1	RefSeq:XP_015622165.1	RefSeq:XP_015622166.1	SEG:seg	:

Description

Pentatricopeptide repeat domain containing protein. (Os01t0785700-01);Pentatricopeptide repeat domain containing protein. (Os01t0785700-02)

Coordinates

chr1:+:33318039..33322908

Molecular Weight (calculated)

47725.0 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.312

Length

434 amino acids

Sequence
(BLAST)

001: MAASAAASRA QRLSRIFSSS SPSVRPPKPG QVKEAPKPAP TKKAPAPGAE ANPNLRRNAI DDIIKGLLRE RDPDKLVSGF IAASSTHPRF RARHRVYDVA
101: VSRLATFGRL DGVEAIIDAQ KPFLETSKEG FAARLIRLYG HASMASHAAA TFHDLPPQLK STMTFNSLLA AYVEAGEFEA LAAAFKEIPV SNPSVVPSVY
201: SYNILLQALC KVPDLSAALD TMTLMEKSGI SPDLVTFNTL LNGFYNHGDM DGAEKVWEMI TERNMVPDAK NYNAKLRGLV AQGRIEDAVA VVEKMEKDGP
301: KPDTISYNEL IRGYCKDGRL EEAKKLFEDM AENGYVANRG TYHTLIPCLV KAGELDYALK CCHEIYGKNL RVDCFVLQEV VTALVTASRV EDATKIVELG
401: WNNSYPRRIL NIPHATEKNK EESISEEEEE PENA

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.