Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26081 | Canola | mitochondrion | 81.16 | 81.57 |
| Bra037096.1-P | Field mustard | mitochondrion | 80.4 | 80.6 |
| CDY08267 | Canola | mitochondrion | 80.4 | 80.6 |
| AT3G13160.1 | Thale cress | mitochondrion | 67.09 | 67.77 |
| VIT_00s0271g00080.t01 | Wine grape | mitochondrion | 47.99 | 52.62 |
| PGSC0003DMT400012953 | Potato | cytosol | 49.5 | 51.98 |
| Solyc03g031460.1.1 | Tomato | plastid | 49.25 | 51.72 |
| VIT_00s0274g00040.t01 | Wine grape | mitochondrion | 49.25 | 51.31 |
| KRH41973 | Soybean | nucleus | 46.73 | 48.82 |
| KRH49916 | Soybean | cytosol | 47.99 | 47.75 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.43 | 35.16 |
| HORVU3Hr1G077400.1 | Barley | cytosol | 31.66 | 32.9 |
| TraesCS3A01G324300.1 | Wheat | plastid | 33.42 | 30.79 |
| Os01t0785700-01 | Rice | mitochondrion | 33.17 | 30.41 |
| Zm00001d012606_P001 | Maize | mitochondrion | 34.17 | 30.02 |
| EES01579 | Sorghum | mitochondrion | 31.91 | 29.6 |
| TraesCS3A01G324200.1 | Wheat | plastid | 33.42 | 29.23 |
| TraesCS3B01G353300.1 | Wheat | plastid | 30.4 | 28.95 |
| TraesCS3D01G317700.1 | Wheat | plastid | 33.67 | 28.39 |
| TraesCS3B01G361800.1 | Wheat | plastid | 31.16 | 28.25 |
| AT1G80150.1 | Thale cress | mitochondrion | 28.14 | 28.21 |
| TraesCS3D01G325200.1 | Wheat | plastid | 31.41 | 27.84 |
| EES01580 | Sorghum | mitochondrion | 30.4 | 27.56 |
| TraesCS3A01G324500.1 | Wheat | plastid | 32.66 | 27.48 |
| TraesCS3A01G331700.1 | Wheat | plastid | 29.4 | 27.4 |
| AT1G61870.1 | Thale cress | mitochondrion | 27.89 | 27.21 |
| AT4G36680.1 | Thale cress | mitochondrion | 28.14 | 27.18 |
| TraesCS3A01G331600.1 | Wheat | plastid | 30.9 | 26.8 |
| AT2G18520.1 | Thale cress | mitochondrion | 28.14 | 26.79 |
| HORVU6Hr1G019320.1 | Barley | plastid | 30.9 | 26.51 |
| HORVU3Hr1G077440.2 | Barley | mitochondrion | 32.66 | 26.48 |
| AT3G13150.1 | Thale cress | plastid | 36.43 | 26.32 |
| TraesCS3D01G317800.1 | Wheat | plastid | 32.41 | 25.65 |
| TraesCS3B01G353500.1 | Wheat | plastid | 32.16 | 25.45 |
| AT1G11630.1 | Thale cress | mitochondrion | 25.38 | 24.94 |
| EER95222 | Sorghum | mitochondrion | 30.65 | 24.75 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:842039 | ProteinID:AAF79315.1 | ProteinID:AEE33315.1 | ArrayExpress:AT1G55890 |
| EnsemblPlantsGene:AT1G55890 | RefSeq:AT1G55890 | TAIR:AT1G55890 | RefSeq:AT1G55890-TAIR-G | EnsemblPlants:AT1G55890.1 | TAIR:AT1G55890.1 |
| EMBL:AY074876 | Unigene:At.21348 | EMBL:BT015869 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_175985.1 | PFAM:PF01535 | PFAM:PF13041 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1622 | InterPro:Pentatricopeptide_repeat | UniProt:Q9LG23 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A82B5 | : | : | : |
Description
Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
Coordinates
chr1:+:20901243..20902800
Molecular Weight (calculated)
44996.5 Da
IEP (calculated)
9.172
GRAVY (calculated)
-0.295
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.