Factsheet for TraesCS3A01G324200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G324300.1	Wheat	plastid	87.91	92.59
TraesCS3D01G317700.1	Wheat	plastid	94.07	90.68
TraesCS3B01G353300.1	Wheat	plastid	82.64	89.95
HORVU3Hr1G077400.1	Barley	cytosol	72.09	85.64
TraesCS3A01G324500.1	Wheat	plastid	80.44	77.38
TraesCS3A01G331700.1	Wheat	plastid	67.03	71.43
TraesCS3A01G331600.1	Wheat	plastid	70.99	70.37
Os01t0785700-01	Rice	mitochondrion	57.8	60.6
EES01580	Sorghum	mitochondrion	54.95	56.95
Zm00001d012606_P001	Maize	mitochondrion	56.04	56.29
EES01579	Sorghum	mitochondrion	51.65	54.78
EER95222	Sorghum	mitochondrion	55.82	51.52
GSMUA_Achr10P...	Banana	mitochondrion	43.08	48.88
VIT_00s0271g00040.t01	Wine grape	cytosol	17.58	39.22
VIT_00s0274g00040.t01	Wine grape	mitochondrion	31.65	37.7
VIT_00s0271g00070.t01	Wine grape	mitochondrion	31.21	37.47
VIT_00s0271g00050.t01	Wine grape	mitochondrion	18.68	37.44
VIT_00s0271g00080.t01	Wine grape	mitochondrion	29.45	36.91
PGSC0003DMT400012953	Potato	cytosol	30.55	36.68
Solyc03g031460.1.1	Tomato	plastid	30.11	36.15
KRH41973	Soybean	nucleus	29.01	34.65
CDY26081	Canola	mitochondrion	29.67	34.09
CDY08267	Canola	mitochondrion	29.23	33.5
Bra037096.1-P	Field mustard	mitochondrion	29.23	33.5
AT1G55890.1	Thale cress	mitochondrion	29.23	33.42
KRH49916	Soybean	cytosol	29.23	33.25
Bra039373.1-P	Field mustard	cytosol	19.56	32.48
PGSC0003DMT400055888	Potato	mitochondrion	26.59	32.1
PGSC0003DMT400055889	Potato	plastid	27.69	32.06
Solyc02g079830.1.1	Tomato	mitochondrion	28.13	32.0
CDY66550	Canola	mitochondrion	20.88	31.77
PGSC0003DMT400071165	Potato	extracellular	12.09	31.25
CDX82550	Canola	mitochondrion	26.81	31.04
AT3G13160.1	Thale cress	mitochondrion	26.81	30.96
CDY24208	Canola	mitochondrion	26.81	30.96
CDY43367	Canola	mitochondrion	26.59	30.71
Bra001492.1-P	Field mustard	mitochondrion	26.59	30.25
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.56	28.43
TraesCS3A01G326500.1	Wheat	mitochondrion	23.3	27.18
TraesCS1A01G160400.1	Wheat	cytosol	12.09	25.11
CDY24210	Canola	plastid	23.96	24.89
CDY43368	Canola	plastid	23.96	24.83
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	20.44	24.03
TraesCS6A01G221200.1	Wheat	mitochondrion	24.4	24.03
Bra039372.1-P	Field mustard	cytosol, plastid	23.74	22.59
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	21.54	21.88
AT3G13150.1	Thale cress	plastid	25.27	20.87

Protein Annotations

EnsemblPlants:TraesCS3A01G324200.1	EnsemblPlantsGene:TraesCS3A01G324200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr3A:+:568971977..568973344

Molecular Weight (calculated)

49724.4 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.319

Length

455 amino acids

Sequence
(BLAST)

001: MASAAAAAAA ARANSLSRIF SSSSPTAKLP KHNPKTKRAP APAPTPKPSA ADADSIAGQK LPKPLDAQPA AKAESDADRK LPKPLDDILI ALIRQRDPDK
101: LVSEFVQAST VSSRFRERHR VYEVAVSRLT SFGRQDGIEA IIEAQKPFLE TSDEGFATRL IRLYGRASMP SHAAATFHEL PAQHKSTMTF NALLAAYAEA
201: GDLDVLTAAF QDIPATHPSI VPSVYSYNIL IRALCQKSDL SAALDVVLLM EKHGVSADII TFNTLLNGFC NNGPTDEAET VWEMMKERNL EPDAKCYNAK
301: LRGLVAEGRI DDAAAVLERL EKDGPKPDTV SYNELIRGYL KAGMLQEAKK LYDDLVKNHC AANKGTYETL VPHLLQVGDL DCALRYCYEM FSRKRGCRVE
401: CGVLQDVVNA LVDASRVEEA AKLVDIGRKK YYYSRKGLRM PGSAKGSELR AETDE

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.