Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43368 | Canola | plastid | 62.25 | 78.13 |
| CDY24210 | Canola | plastid | 62.07 | 78.08 |
| Bra039372.1-P | Field mustard | cytosol, plastid | 60.44 | 69.67 |
| VIT_00s0271g00050.t01 | Wine grape | mitochondrion | 20.33 | 49.34 |
| VIT_00s0271g00070.t01 | Wine grape | mitochondrion | 32.12 | 46.7 |
| VIT_00s0271g00040.t01 | Wine grape | cytosol | 16.15 | 43.63 |
| PGSC0003DMT400055889 | Potato | plastid | 28.86 | 40.46 |
| Solyc02g079830.1.1 | Tomato | mitochondrion | 28.68 | 39.5 |
| AT3G13160.1 | Thale cress | mitochondrion | 27.4 | 38.32 |
| PGSC0003DMT400055888 | Potato | mitochondrion | 25.59 | 37.4 |
| Solyc02g079820.2.1 | Tomato | cytosol, plastid | 20.87 | 36.74 |
| AT1G55890.1 | Thale cress | mitochondrion | 26.32 | 36.43 |
| PGSC0003DMT400071165 | Potato | extracellular | 9.8 | 30.68 |
| GSMUA_Achr10P... | Banana | mitochondrion | 21.78 | 29.93 |
| EES01579 | Sorghum | mitochondrion | 21.6 | 27.74 |
| HORVU3Hr1G077400.1 | Barley | cytosol | 19.24 | 27.68 |
| TraesCS3B01G353300.1 | Wheat | plastid | 20.69 | 27.27 |
| AT1G61870.1 | Thale cress | mitochondrion | 20.15 | 27.21 |
| AT1G11630.1 | Thale cress | mitochondrion | 19.78 | 26.91 |
| Zm00001d012606_P001 | Maize | mitochondrion | 21.6 | 26.27 |
| Os01t0785700-01 | Rice | mitochondrion | 20.69 | 26.27 |
| TraesCS3B01G361800.1 | Wheat | plastid | 20.69 | 25.97 |
| TraesCS3A01G324300.1 | Wheat | plastid | 20.33 | 25.93 |
| EES01580 | Sorghum | mitochondrion | 20.33 | 25.51 |
| AT1G80150.1 | Thale cress | mitochondrion | 18.33 | 25.44 |
| TraesCS3A01G324200.1 | Wheat | plastid | 20.87 | 25.27 |
| TraesCS3A01G331700.1 | Wheat | plastid | 19.42 | 25.06 |
| TraesCS3A01G331600.1 | Wheat | plastid | 20.69 | 24.84 |
| TraesCS3D01G317700.1 | Wheat | plastid | 21.23 | 24.79 |
| TraesCS3D01G325200.1 | Wheat | plastid | 19.78 | 24.28 |
| AT2G18520.1 | Thale cress | mitochondrion | 18.15 | 23.92 |
| AT4G36680.1 | Thale cress | mitochondrion | 17.79 | 23.79 |
| HORVU6Hr1G019320.1 | Barley | plastid | 19.78 | 23.49 |
| TraesCS3A01G324500.1 | Wheat | plastid | 19.96 | 23.26 |
| EER95222 | Sorghum | mitochondrion | 20.51 | 22.92 |
| HORVU3Hr1G077440.2 | Barley | mitochondrion | 20.15 | 22.61 |
| TraesCS3B01G353500.1 | Wheat | plastid | 19.96 | 21.87 |
| TraesCS3D01G317800.1 | Wheat | plastid | 19.42 | 21.27 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:820503 | ProteinID:AEE75302.1 | ArrayExpress:AT3G13150 | EnsemblPlantsGene:AT3G13150 |
| RefSeq:AT3G13150 | TAIR:AT3G13150 | RefSeq:AT3G13150-TAIR-G | EnsemblPlants:AT3G13150.1 | TAIR:AT3G13150.1 | Unigene:At.8126 |
| ProteinID:BAB01406.1 | EMBL:BT023440 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_187922.1 |
| PFAM:PF01535 | PFAM:PF13041 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1052 | InterPro:Pentatricopeptide_repeat | UniProt:Q9LK58 | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A6AB1 | SEG:seg | : | : | : |
Description
Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
Coordinates
chr3:-:4227737..4229752
Molecular Weight (calculated)
60632.9 Da
IEP (calculated)
8.078
GRAVY (calculated)
-0.523
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.