Factsheet for VIT_00s0271g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0271g00070.t01	Wine grape	mitochondrion	92.95	55.67
VIT_00s0271g00080.t01	Wine grape	mitochondrion	55.07	34.44
VIT_00s0274g00040.t01	Wine grape	mitochondrion	56.39	33.51
PGSC0003DMT400055889	Potato	plastid	51.1	29.52
Solyc02g079830.1.1	Tomato	mitochondrion	50.66	28.75
PGSC0003DMT400055888	Potato	mitochondrion	44.93	27.06
CDY24210	Canola	plastid	49.78	25.8
CDY43368	Canola	plastid	49.78	25.74
Solyc02g079820.2.1	Tomato	cytosol, plastid	33.48	24.28
Bra039372.1-P	Field mustard	cytosol, plastid	48.46	23.01
VIT_10s0116g00090.t01	Wine grape	mitochondrion	25.55	22.75
VIT_00s0271g00040.t01	Wine grape	cytosol	20.26	22.55
GSMUA_Achr10P...	Banana	mitochondrion	38.33	21.7
HORVU3Hr1G077400.1	Barley	cytosol	35.68	21.15
TraesCS3B01G353300.1	Wheat	plastid	37.89	20.57
AT3G13150.1	Thale cress	plastid	49.34	20.33
TraesCS3A01G324300.1	Wheat	plastid	37.44	19.68
Os01t0785700-01	Rice	mitochondrion	36.56	19.12
TraesCS3A01G324200.1	Wheat	plastid	37.44	18.68
VIT_04s0023g01460.t01	Wine grape	mitochondrion	33.92	18.6
TraesCS3A01G331700.1	Wheat	plastid	34.36	18.27
VIT_09s0002g06540.t01	Wine grape	mitochondrion	33.48	18.01
TraesCS3D01G317700.1	Wheat	plastid	37.0	17.8
TraesCS3B01G361800.1	Wheat	plastid	34.36	17.77
TraesCS3A01G324500.1	Wheat	plastid	37.0	17.76
EES01580	Sorghum	mitochondrion	33.92	17.54
HORVU6Hr1G019320.1	Barley	plastid	35.68	17.46
Zm00001d012606_P001	Maize	mitochondrion	34.36	17.22
TraesCS3D01G325200.1	Wheat	plastid	33.92	17.15
TraesCS3D01G317800.1	Wheat	plastid	37.44	16.9
HORVU3Hr1G077440.2	Barley	mitochondrion	36.12	16.7
TraesCS3A01G331600.1	Wheat	plastid	33.48	16.56
EES01579	Sorghum	mitochondrion	31.28	16.55
TraesCS3B01G353500.1	Wheat	plastid	36.56	16.5
EER95222	Sorghum	mitochondrion	34.36	15.82
VIT_10s0116g00030.t01	Wine grape	plastid	25.99	14.9
VIT_01s0010g01460.t01	Wine grape	mitochondrion	24.67	14.51
PGSC0003DMT400071165	Potato	extracellular	9.69	12.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:CCB62878	ProteinID:CCB62878.1	UniProt:F6I7G0	EMBL:FN596782
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210ABE0	ArrayExpress:VIT_00s0271g00050	EnsemblPlantsGene:VIT_00s0271g00050	EnsemblPlants:VIT_00s0271g00050.t01	SEG:seg

Description

No Description!

Coordinates

chrUn:-:20113240..20113923

Molecular Weight (calculated)

25654.8 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.282

Length

227 amino acids

Sequence
(BLAST)

001: MSSLARRLRG IFTSPLPATT KTPAKTIKRS SSNNSTLKEM IDKFKKSSDS KRFRSRYGYY EKAVLTLAKA KKLSFIEDIL EHQEQYNEIS TEVFAVRLMT
101: LYGTAGMFDH AHKLFDELPK LNCERTVMSF NALLSACVNS KKFDKIDGFF QELPGNLGIV PDVVSYNILV NAFCEMGSLD SALSVLDEME KVGLEPDLIT
201: FNTLLNAFYH SGTYGDGEKI WDLRKNN

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.