Factsheet for VIT_00s0271g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01
VIT_17s0000g09280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT1G55890.1	VIT_17s0000g09280.t01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0274g00040.t01	Wine grape	mitochondrion	97.25	92.41
VIT_00s0271g00050.t01	Wine grape	mitochondrion	34.44	55.07
PGSC0003DMT400012953	Potato	cytosol	55.65	53.3
Solyc03g031460.1.1	Tomato	plastid	54.55	52.24
CDY66550	Canola	mitochondrion	42.42	51.51
VIT_00s0271g00070.t01	Wine grape	mitochondrion	52.89	50.66
KRH41973	Soybean	nucleus	53.17	50.66
Bra039373.1-P	Field mustard	cytosol	36.36	48.18
KRH49916	Soybean	cytosol	52.89	48.0
AT1G55890.1	Thale cress	mitochondrion	52.62	47.99
CDX82550	Canola	mitochondrion	51.79	47.84
AT3G13160.1	Thale cress	mitochondrion	51.79	47.72
VIT_00s0271g00040.t01	Wine grape	cytosol	26.72	47.55
CDY26081	Canola	mitochondrion	51.79	47.47
CDY43367	Canola	mitochondrion	51.52	47.46
Bra001492.1-P	Field mustard	mitochondrion	51.79	47.0
Bra037096.1-P	Field mustard	mitochondrion	51.24	46.85
CDY08267	Canola	mitochondrion	51.24	46.85
CDY24208	Canola	mitochondrion	50.41	46.45
GSMUA_Achr10P...	Banana	mitochondrion	40.22	36.41
HORVU3Hr1G077400.1	Barley	cytosol	34.99	33.16
Zm00001d012606_P001	Maize	mitochondrion	40.5	32.45
TraesCS3A01G324300.1	Wheat	plastid	38.29	32.18
Os01t0785700-01	Rice	mitochondrion	37.74	31.57
EES01580	Sorghum	mitochondrion	37.74	31.21
EES01579	Sorghum	mitochondrion	35.81	30.3
TraesCS3B01G361800.1	Wheat	plastid	36.09	29.84
TraesCS3A01G324200.1	Wheat	plastid	36.91	29.45
VIT_04s0023g01460.t01	Wine grape	mitochondrion	33.33	29.23
TraesCS3B01G353300.1	Wheat	plastid	33.61	29.19
TraesCS3D01G325200.1	Wheat	plastid	35.54	28.73
VIT_09s0002g06540.t01	Wine grape	mitochondrion	33.33	28.67
TraesCS3D01G317700.1	Wheat	plastid	37.19	28.6
TraesCS3A01G331700.1	Wheat	plastid	33.61	28.57
TraesCS3A01G331600.1	Wheat	plastid	35.81	28.32
HORVU6Hr1G019320.1	Barley	plastid	36.09	28.23
EER95222	Sorghum	mitochondrion	38.02	27.99
TraesCS3A01G324500.1	Wheat	plastid	36.09	27.7
VIT_10s0116g00090.t01	Wine grape	mitochondrion	19.01	27.06
HORVU3Hr1G077440.2	Barley	mitochondrion	35.81	26.48
VIT_01s0010g01460.t01	Wine grape	mitochondrion	27.82	26.17
TraesCS3B01G353500.1	Wheat	plastid	35.81	25.84
TraesCS3D01G317800.1	Wheat	plastid	35.54	25.65
VIT_10s0116g00030.t01	Wine grape	plastid	27.55	25.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:CCB62881	ProteinID:CCB62881.1	UniProt:F6I7G3	EMBL:FN596782
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	TIGR:TC63250
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210ABE2	ArrayExpress:VIT_00s0271g00080	EnsemblPlantsGene:VIT_00s0271g00080	EnsemblPlants:VIT_00s0271g00080.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:20123716..20129370

Molecular Weight (calculated)

41256.8 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.354

Length

363 amino acids

Sequence
(BLAST)

001: MSFLSRRLYR AFSTSTAATA QATGNLESVF KDIYRERNLK RLVQKFKKSS ELDRFRTKTG IYEETVRRLA SAKRFRWIEE ILEEQKKYKD ISREGFAVRL
101: ISLYGKSGMF DHAFKVFDEM PDQKCERSVL SFNALLGACV HSKKFDKVEG FFSELPSKLS VEPDLVSYNI VIKGLCDMGS MDSAVGMLDE MEKKSLEPDL
201: ITFNTLLNGC YTSGRFLDGE KIWGRMEKKN ILPDIRSYNA KLVGLVSSEK RMLEGIGLVE EMQTKGIKPD GYSFNALIKG FCNDGKVDEA TNWYGKMREN
301: DCSPDKLTFA TLVPLYCEKG SFDQAFELCK EIFNRKCLVD EVLLQNAVDG LVKGGLGFDV SKN

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.